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7f9b7b3f0e
transformers/tests/models
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Matt 7f9b7b3f0e
Add ESMFold (#19977) 
* initial commit

* First draft that gets outputs without crashing!

* Add all the ported openfold dependencies

* testing

* Restructure config files for ESMFold

* Debugging to find output discrepancies

* Mainly style

* Make model runnable without extra deps

* Remove utils and merge them to the modeling file

* Use correct gelu and remove some debug prints

* More cleanup

* Update esm docs

* Update conversion script to support ESMFold properly

* Port some top-level changes from ESMFold repo

* Expand EsmFold docstrings

* Make attention_mask optional (default to all 1s)

* Add inference test for ESMFold

* Use config and not n kwargs

* Add modeling output class

* Remove einops

* Remove chunking in ESM FFN

* Update tests for ESMFold

* Quality

* REpo consistency

* Remove tree dependency from ESMFold

* make fixup

* Add an error in case my structure map function breaks later

* Remove needless code

* Stop auto-casting the LM to float16 so CPU tests pass

* Stop auto-casting the LM to float16 so CPU tests pass

* Final test updates

* Split test file

* Copyright and quality

* Unpin PyTorch to see built doc

* Fix config file to_dict() method

* Add some docstrings to the output

* Skip TF checkpoint tests for ESM until we reupload those

* make fixup

* More docstrings

* Unpin to get even with main

* Flag example to write

Co-authored-by: Sylvain Gugger <Sylvain.gugger@gmail.com>
2022-10-31 21:32:58 -04:00
..
albert Move test model folders (#17034) 2022-05-03 14:42:02 +02:00
auto Throw an error if getattribute_from_module can't find anything (#19535) 2022-10-12 20:09:45 +02:00
bart TF: TF 2.10 unpin + related onnx test skips (#18995) 2022-09-12 19:30:27 +01:00
barthez Move test model folders (#17034) 2022-05-03 14:42:02 +02:00
bartpho Move test model folders (#17034) 2022-05-03 14:42:02 +02:00
beit Clean up deprecation warnings (#19654) 2022-10-18 13:34:47 -04:00
bert Allow usage of TF Text BertTokenizer on TFBertTokenizer to make it servable on TF Serving (#19590) 2022-10-14 15:18:02 +01:00
bert_generation Black preview (#17217) 2022-05-12 16:25:55 -04:00
bert_japanese Add sentencepiece to BertJapaneseTokenizer (#19769) 2022-10-21 10:04:49 -04:00
bertweet Move test model folders (#17034) 2022-05-03 14:42:02 +02:00
big_bird wrap forward passes with torch.no_grad() (#19273) 2022-10-04 16:13:22 +02:00
bigbird_pegasus Black preview (#17217) 2022-05-12 16:25:55 -04:00
blenderbot 🚨🚨🚨 TF: Remove TFWrappedEmbeddings (breaking: TF embedding initialization updated for encoder-decoder models) (#19263) 2022-10-11 16:48:03 +01:00
blenderbot_small 🚨🚨🚨 TF: Remove TFWrappedEmbeddings (breaking: TF embedding initialization updated for encoder-decoder models) (#19263) 2022-10-11 16:48:03 +01:00
bloom Skip BloomEmbeddingTest.test_embeddings for PyTorch < 1.10 (#19261) 2022-10-10 10:05:30 +02:00
bort Move test model folders (#17034) 2022-05-03 14:42:02 +02:00
byt5 Replace as_target context managers by direct calls (#18325) 2022-07-29 08:09:09 -04:00
camembert Move test model folders (#17034) 2022-05-03 14:42:02 +02:00
canine Replace as_target context managers by direct calls (#18325) 2022-07-29 08:09:09 -04:00
clip Update serving code to enable saved_model=True (#18153) 2022-07-22 18:05:38 +01:00
codegen Update expected values in CodeGen tests (#17888) 2022-07-01 15:33:36 +02:00
conditional_detr [Conditional, Deformable DETR] Add postprocessing methods (#19709) 2022-10-31 08:28:44 +01:00
convbert wrap forward passes with torch.no_grad() (#19274) 2022-10-04 16:12:03 +02:00
convnext FX support for ConvNext, Wav2Vec2 and ResNet (#19053) 2022-09-16 10:57:41 +02:00
cpm Move test model folders (#17034) 2022-05-03 14:42:02 +02:00
ctrl Fix CTRL tests (#17508) 2022-06-01 16:27:23 +02:00
cvt [CvT] Tensorflow implementation (#18597) 2022-10-11 18:16:52 +01:00
data2vec skip some test_multi_gpu_data_parallel_forward (#18188) 2022-07-20 15:54:44 +02:00
deberta fix train_new_from_iterator in the case of byte-level tokenizers (#17549) 2022-06-08 15:30:41 +02:00
deberta_v2 wrap forward passes with torch.no_grad() (#19278) 2022-10-04 16:09:23 +02:00
decision_transformer Update expected values in DecisionTransformerModelIntegrationTest (#18016) 2022-07-05 14:53:43 +02:00
deformable_detr [Conditional, Deformable DETR] Add postprocessing methods (#19709) 2022-10-31 08:28:44 +01:00
deit wrap forward passes with torch.no_grad() (#19279) 2022-10-04 16:08:29 +02:00
detr [fix] Add DeformableDetrFeatureExtractor (#19140) 2022-09-22 09:45:24 +02:00
distilbert Move test model folders (#17034) 2022-05-03 14:42:02 +02:00
dit Move test model folders (#17034) 2022-05-03 14:42:02 +02:00
donut remvoe _create_and_check_torch_fx_tracing in specific test files (#18667) 2022-09-07 16:22:09 +02:00
dpr Replace as_target context managers by direct calls (#18325) 2022-07-29 08:09:09 -04:00
dpt Add post_process_semantic_segmentation method to DPTFeatureExtractor (#19107) 2022-09-21 15:15:26 +03:00
electra Move test model folders (#17034) 2022-05-03 14:42:02 +02:00
encoder_decoder Add support for gradient checkpointing (#19990) 2022-10-31 18:37:17 +01:00
ernie add task_type_id to BERT to support ERNIE-2.0 and ERNIE-3.0 models (#18686) 2022-09-09 07:36:46 -04:00
esm Add ESMFold (#19977) 2022-10-31 21:32:58 -04:00
flaubert wrap forward passes with torch.no_grad() (#19412) 2022-10-10 15:04:10 -04:00
flava Clean up deprecation warnings (#19654) 2022-10-18 13:34:47 -04:00
fnet wrap forward passes with torch.no_grad() (#19413) 2022-10-10 15:03:46 -04:00
fsmt Not use -1e4 as attn mask (#17306) 2022-06-20 16:16:16 +02:00
funnel Update serving code to enable saved_model=True (#18153) 2022-07-22 18:05:38 +01:00
glpn Move test model folders (#17034) 2022-05-03 14:42:02 +02:00
gpt_neo fix train_new_from_iterator in the case of byte-level tokenizers (#17549) 2022-06-08 15:30:41 +02:00
gpt_neox skip some gpt_neox tests that require 80G RAM (#17923) 2022-07-01 09:04:38 -04:00
gpt_neox_japanese Add support for Japanese GPT-NeoX-based model by ABEJA, Inc. (#18814) 2022-09-14 10:17:40 -04:00
gpt2 Fixing OPT fast tokenizer option. (#18753) 2022-09-15 17:12:58 +02:00
gptj TF: GPT-J compatible with XLA generation (#17986) 2022-07-06 15:02:07 +01:00
groupvit Fix TFGroupViT CI (#19461) 2022-10-11 14:29:15 +02:00
herbert Move test model folders (#17034) 2022-05-03 14:42:02 +02:00
hubert Fix train_step, test_step and tests for CLIP (#18684) 2022-09-09 20:01:02 +01:00
ibert fix train_new_from_iterator in the case of byte-level tokenizers (#17549) 2022-06-08 15:30:41 +02:00
imagegpt wrap forward passes with torch.no_grad() (#19414) 2022-10-10 15:03:24 -04:00
layoutlm TF: TF 2.10 unpin + related onnx test skips (#18995) 2022-09-12 19:30:27 +01:00
layoutlmv2 add warning to let the user know that the __call__ method is faster than encode + pad for a fast tokenizer (#18693) 2022-08-24 06:27:56 -04:00
layoutlmv3 Fix test_tf_encode_plus_sent_to_model for LayoutLMv3 (#18898) 2022-09-06 14:51:03 +02:00
layoutxlm LayoutXLMProcessor: ensure 1-to-1 mapping between samples and images, and add test for it (#18774) 2022-08-30 14:43:14 +02:00
led Update LEDModelIntegrationTests expected values (#19841) 2022-10-24 16:05:26 +02:00
levit Add skip logic for attentions test - Levit (#17633) 2022-06-10 12:46:30 +02:00
lilt Add LiLT (#19450) 2022-10-12 10:11:20 +02:00
longformer Fix tflongformer int dtype (#18907) 2022-09-12 17:51:10 +01:00
longt5 Skip test_export_to_onnx for LongT5 if torch < 1.11 (#19122) 2022-09-20 21:52:18 +02:00
luke Adding fine-tuning models to LUKE (#18353) 2022-08-01 11:09:47 -04:00
lxmert Update serving code to enable saved_model=True (#18153) 2022-07-22 18:05:38 +01:00
m2m_100 Add missing lang tokens in M2M100Tokenizer.get_vocab (#18416) 2022-10-25 09:18:24 -04:00
marian 🚨🚨🚨 TF: Remove TFWrappedEmbeddings (breaking: TF embedding initialization updated for encoder-decoder models) (#19263) 2022-10-11 16:48:03 +01:00
markuplm Add MarkupLM (#19198) 2022-09-30 08:25:43 +02:00
maskformer Fix image segmentation pipeline errors, resolve backward compatibility issues (#19768) 2022-10-21 18:09:58 +03:00
mbart 🚨🚨🚨 TF: Remove TFWrappedEmbeddings (breaking: TF embedding initialization updated for encoder-decoder models) (#19263) 2022-10-11 16:48:03 +01:00
mbart50 Replace as_target context managers by direct calls (#18325) 2022-07-29 08:09:09 -04:00
mctct Replace as_target context managers by direct calls (#18325) 2022-07-29 08:09:09 -04:00
megatron_bert Move test model folders (#17034) 2022-05-03 14:42:02 +02:00
megatron_gpt2 Move test model folders (#17034) 2022-05-03 14:42:02 +02:00
mluke Black preview (#17217) 2022-05-12 16:25:55 -04:00
mobilebert Fix train_step, test_step and tests for CLIP (#18684) 2022-09-09 20:01:02 +01:00
mobilevit Add semantic segmentation post-processing method to MobileViT (#19105) 2022-09-23 16:24:28 +03:00
mpnet Move test model folders (#17034) 2022-05-03 14:42:02 +02:00
mt5 Fix expected loss values in some (m)T5 tests (#18177) 2022-07-18 15:26:21 +02:00
mvp Replace as_target context managers by direct calls (#18325) 2022-07-29 08:09:09 -04:00
nezha speed up test (#18106) 2022-07-12 04:28:28 -04:00
nllb Replace as_target context managers by direct calls (#18325) 2022-07-29 08:09:09 -04:00
nystromformer Move test model folders (#17034) 2022-05-03 14:42:02 +02:00
openai Move test model folders (#17034) 2022-05-03 14:42:02 +02:00
opt Add OPTForQuestionAnswering (#19402) 2022-10-10 09:30:59 -04:00
owlvit fix owlvit tests, update docstring examples (#18586) 2022-08-11 19:10:25 +03:00
pegasus 🚨🚨🚨 TF: Remove TFWrappedEmbeddings (breaking: TF embedding initialization updated for encoder-decoder models) (#19263) 2022-10-11 16:48:03 +01:00
pegasus_x Fix CI for PegasusX (#19025) 2022-09-14 14:45:00 +02:00
perceiver Replace as_target context managers by direct calls (#18325) 2022-07-29 08:09:09 -04:00
phobert Move test model folders (#17034) 2022-05-03 14:42:02 +02:00
plbart Replace as_target context managers by direct calls (#18325) 2022-07-29 08:09:09 -04:00
poolformer has_attentions - consistent test skipping logic and tf tests (#17495) 2022-06-09 09:50:03 +02:00
prophetnet Black preview (#17217) 2022-05-12 16:25:55 -04:00
qdqbert Move test model folders (#17034) 2022-05-03 14:42:02 +02:00
rag Avoid GPU OOM for a TF Rag test (#17638) 2022-06-10 18:50:29 +02:00
realm Black preview (#17217) 2022-05-12 16:25:55 -04:00
reformer Black preview (#17217) 2022-05-12 16:25:55 -04:00
regnet Run tests if skip condition not met (#18764) 2022-08-30 14:03:28 +02:00
rembert Move test model folders (#17034) 2022-05-03 14:42:02 +02:00
resnet FX support for ConvNext, Wav2Vec2 and ResNet (#19053) 2022-09-16 10:57:41 +02:00
retribert fix retribert's test_torch_encode_plus_sent_to_model (#17231) 2022-05-17 14:33:13 +02:00
roberta fix train_new_from_iterator in the case of byte-level tokenizers (#17549) 2022-06-08 15:30:41 +02:00
roformer wrap forward passes with torch.no_grad() (#19438) 2022-10-10 14:54:54 -04:00
segformer Support segformer fx (#19924) 2022-10-28 08:44:38 -04:00
sew Move test model folders (#17034) 2022-05-03 14:42:02 +02:00
sew_d Move test model folders (#17034) 2022-05-03 14:42:02 +02:00
speech_encoder_decoder send model to the correct device (#18800) 2022-08-29 18:46:30 +02:00
speech_to_text remvoe _create_and_check_torch_fx_tracing in specific test files (#18667) 2022-09-07 16:22:09 +02:00
speech_to_text_2 Fx support for multiple model architectures (#17393) 2022-05-31 10:02:55 +02:00
splinter Fix Splinter test (#17854) 2022-06-24 16:26:14 +02:00
squeezebert Move test model folders (#17034) 2022-05-03 14:42:02 +02:00
swin remvoe _create_and_check_torch_fx_tracing in specific test files (#18667) 2022-09-07 16:22:09 +02:00
swinv2 Add swin transformer v2 (#17469) 2022-07-27 11:14:47 -04:00
t5 🚨🚨🚨 TF: Remove TFWrappedEmbeddings (breaking: TF embedding initialization updated for encoder-decoder models) (#19263) 2022-10-11 16:48:03 +01:00
table_transformer Add table transformer [v2] (#19614) 2022-10-18 15:20:09 +02:00
tapas Fix test_tf_encode_plus_sent_to_model for TAPAS (#19559) 2022-10-14 16:10:36 +02:00
tapex Replace as_target context managers by direct calls (#18325) 2022-07-29 08:09:09 -04:00
time_series_transformer Add a decorator for flaky tests (#19498) 2022-10-12 14:00:17 -04:00
trajectory_transformer Add trajectory transformer (#17141) 2022-05-17 19:07:43 -04:00
transfo_xl Add magic method to our TF models to convert datasets with column inference (#17160) 2022-06-06 15:53:49 +01:00
trocr Fx support for multiple model architectures (#17393) 2022-05-31 10:02:55 +02:00
unispeech Move test model folders (#17034) 2022-05-03 14:42:02 +02:00
unispeech_sat Move test model folders (#17034) 2022-05-03 14:42:02 +02:00
van has_attentions - consistent test skipping logic and tf tests (#17495) 2022-06-09 09:50:03 +02:00
videomae Use repo_type instead of deprecated datasets repo IDs (#19202) 2022-09-26 09:50:48 -04:00
vilt [Past CI] Vilt only supports PT >= v1.10 (#19851) 2022-10-25 15:59:35 +02:00
vision_encoder_decoder PT <-> TF for composite models (#19732) 2022-10-21 12:40:39 +02:00
vision_text_dual_encoder Move test model folders (#17034) 2022-05-03 14:42:02 +02:00
visual_bert wrap forward passes with torch.no_grad() (#19439) 2022-10-10 14:54:36 -04:00
vit Improve vision models (#17731) 2022-06-24 11:34:51 +02:00
vit_mae TF: tests for (de)serializable models with resized tokens (#19013) 2022-09-16 16:38:08 +01:00
vit_msn Some fixes regarding auto mappings and test class names (#19923) 2022-10-27 14:38:59 +02:00
wav2vec2 Fix bug in Wav2Vec2's GPU tests (#19803) 2022-10-27 09:00:03 -04:00
wav2vec2_conformer [Test] Fix W2V-Conformer integration test (#17303) 2022-05-17 18:20:36 +02:00
wav2vec2_phoneme Move test model folders (#17034) 2022-05-03 14:42:02 +02:00
wav2vec2_with_lm Allow user-managed Pool in Wav2Vec2ProcessorWithLM.batch_decode (#18351) 2022-10-18 08:48:03 -04:00
wavlm Move test model folders (#17034) 2022-05-03 14:42:02 +02:00
whisper Run some TF Whisper tests in subprocesses to avoid GPU OOM (#19772) 2022-10-21 21:59:18 +02:00
x_clip [X-CLIP] Fix doc tests (#19523) 2022-10-12 17:05:12 +02:00
xglm XGLM - Fix Softmax NaNs when using FP16 (#18057) 2022-09-29 10:42:07 +02:00
xlm Move test model folders (#17034) 2022-05-03 14:42:02 +02:00
xlm_prophetnet Black preview (#17217) 2022-05-12 16:25:55 -04:00
xlm_roberta Black preview (#17217) 2022-05-12 16:25:55 -04:00
xlm_roberta_xl Move test model folders (#17034) 2022-05-03 14:42:02 +02:00
xlnet Return scalar losses instead of per-sample means (#18013) 2022-07-04 17:26:19 +01:00
yolos [fix] Add DeformableDetrFeatureExtractor (#19140) 2022-09-22 09:45:24 +02:00
yoso fix train_new_from_iterator in the case of byte-level tokenizers (#17549) 2022-06-08 15:30:41 +02:00
__init__.py Move test model folders (#17034) 2022-05-03 14:42:02 +02:00