transformers/examples/token-classification/README.md
2021-02-19 16:06:13 -05:00

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## Token classification
Fine-tuning the library models for token classification task such as Named Entity Recognition (NER) or Parts-of-speech
tagging (POS). The main scrip `run_ner.py` leverages the 🤗 Datasets library and the Trainer API. You can easily
customize it to your needs if you need extra processing on your datasets.
It will either run on a datasets hosted on our [hub](https://huggingface.co/datasets) or with your own text files for
training and validation.
The following example fine-tunes BERT on CoNLL-2003:
```bash
python run_ner.py \
--model_name_or_path bert-base-uncased \
--dataset_name conll2003 \
--output_dir /tmp/test-ner \
--do_train \
--do_eval
```
or just can just run the bash script `run.sh`.
To run on your own training and validation files, use the following command:
```bash
python run_ner.py \
--model_name_or_path bert-base-uncased \
--train_file path_to_train_file \
--validation_file path_to_validation_file \
--output_dir /tmp/test-ner \
--do_train \
--do_eval
```
**Note:** This script only works with models that have a fast tokenizer (backed by the 🤗 Tokenizers library) as it
uses special features of those tokenizers. You can check if your favorite model has a fast tokenizer in
[this table](https://huggingface.co/transformers/index.html#bigtable), if it doesn't you can still use the old version
of the script.
## Old version of the script
You can find the old version of the PyTorch script [here](https://github.com/huggingface/transformers/blob/master/examples/legacy/token-classification/run_ner.py).
### TensorFlow version
The following examples are covered in this section:
* NER on the GermEval 2014 (German NER) dataset
* Emerging and Rare Entities task: WNUT17 (English NER) dataset
Details and results for the fine-tuning provided by @stefan-it.
### GermEval 2014 (German NER) dataset
#### Data (Download and pre-processing steps)
Data can be obtained from the [GermEval 2014](https://sites.google.com/site/germeval2014ner/data) shared task page.
Here are the commands for downloading and pre-processing train, dev and test datasets. The original data format has four (tab-separated) columns, in a pre-processing step only the two relevant columns (token and outer span NER annotation) are extracted:
```bash
curl -L 'https://drive.google.com/uc?export=download&id=1Jjhbal535VVz2ap4v4r_rN1UEHTdLK5P' \
| grep -v "^#" | cut -f 2,3 | tr '\t' ' ' > train.txt.tmp
curl -L 'https://drive.google.com/uc?export=download&id=1ZfRcQThdtAR5PPRjIDtrVP7BtXSCUBbm' \
| grep -v "^#" | cut -f 2,3 | tr '\t' ' ' > dev.txt.tmp
curl -L 'https://drive.google.com/uc?export=download&id=1u9mb7kNJHWQCWyweMDRMuTFoOHOfeBTH' \
| grep -v "^#" | cut -f 2,3 | tr '\t' ' ' > test.txt.tmp
```
The GermEval 2014 dataset contains some strange "control character" tokens like `'\x96', '\u200e', '\x95', '\xad' or '\x80'`.
One problem with these tokens is, that `BertTokenizer` returns an empty token for them, resulting in misaligned `InputExample`s.
The `preprocess.py` script located in the `scripts` folder a) filters these tokens and b) splits longer sentences into smaller ones (once the max. subtoken length is reached).
Let's define some variables that we need for further pre-processing steps and training the model:
```bash
export MAX_LENGTH=128
export BERT_MODEL=bert-base-multilingual-cased
```
Run the pre-processing script on training, dev and test datasets:
```bash
python3 scripts/preprocess.py train.txt.tmp $BERT_MODEL $MAX_LENGTH > train.txt
python3 scripts/preprocess.py dev.txt.tmp $BERT_MODEL $MAX_LENGTH > dev.txt
python3 scripts/preprocess.py test.txt.tmp $BERT_MODEL $MAX_LENGTH > test.txt
```
The GermEval 2014 dataset has much more labels than CoNLL-2002/2003 datasets, so an own set of labels must be used:
```bash
cat train.txt dev.txt test.txt | cut -d " " -f 2 | grep -v "^$"| sort | uniq > labels.txt
```
#### Prepare the run
Additional environment variables must be set:
```bash
export OUTPUT_DIR=germeval-model
export BATCH_SIZE=32
export NUM_EPOCHS=3
export SAVE_STEPS=750
export SEED=1
```