transformers/examples/rag/test_distributed_retriever.py
Ola Piktus c754c41c61
RAG (#6813)
* added rag WIP

* path fix

* Formatting / renaming prior to actual work

* added rag WIP

* path fix

* Formatting / renaming prior to actual work

* added rag WIP

* path fix

* Formatting / renaming prior to actual work

* added rag WIP

* Formatting / renaming prior to actual work

* First commit

* improve comments

* Retrieval evaluation scripts

* refactor to include modeling outputs + MPI retriever

* Fix rag-token model + refactor

* Various fixes + finetuning logic

* use_bos fix

* Retrieval refactor

* Finetuning refactoring and cleanup

* Add documentation and cleanup

* Remove set_up_rag_env.sh file

* Fix retrieval wit HF index

* Fix import errors

* Fix quality errors

* Refactor as per suggestions in https://github.com/huggingface/transformers/pull/6813#issuecomment-687208867

* fix quality

* Fix RAG Sequence generation

* minor cleanup plus initial tests

* fix test

* fix tests 2

* Comments fix

* post-merge fixes

* Improve readme + post-rebase refactor

* Extra dependencied for tests

* Fix tests

* Fix tests 2

* Refactor test requirements

* Fix tests 3

* Post-rebase refactor

* rename nlp->datasets

* RAG integration tests

* add tokenizer to slow integration test and allow retriever to run on cpu

* add tests; fix position ids warning

* change structure

* change structure

* add from encoder generator

* save working solution

* make all integration tests pass

* add RagTokenizer.save/from_pretrained and RagRetriever.save/from_pretrained

* don't save paths

* delete unnecessary imports

* pass config to AutoTokenizer.from_pretrained for Rag tokenizers

* init wiki_dpr only once

* hardcode legacy index and passages paths (todo: add the right urls)

* finalize config

* finalize retriver api and config api

* LegacyIndex index download refactor

* add dpr to autotokenizer

* make from pretrained more flexible

* fix ragfortokengeneration

* small name changes in tokenizer

* add labels to models

* change default index name

* add retrieval tests

* finish token generate

* align test with previous version and make all tests pass

* add tests

* finalize tests

* implement thoms suggestions

* add first version of test

* make first tests work

* make retriever platform agnostic

* naming

* style

* add legacy index URL

* docstrings + simple retrieval test for distributed

* clean model api

* add doc_ids to retriever's outputs

* fix retrieval tests

* finish model outputs

* finalize model api

* fix generate problem for rag

* fix generate for other modles

* fix some tests

* save intermediate

* set generate to default

* big refactor generate

* delete rag_api

* correct pip faiss install

* fix auto tokenization test

* fix faiss install

* fix test

* move the distributed logic to examples

* model page

* docs

* finish tests

* fix dependencies

* fix import in __init__

* Refactor eval_rag and finetune scripts

* start docstring

* add psutil to test

* fix tf test

* move require torch to top

* fix retrieval test

* align naming

* finish automodel

* fix repo consistency

* test ragtokenizer save/load

* add rag model output docs

* fix ragtokenizer save/load from pretrained

* fix tokenizer dir

* remove torch in retrieval

* fix docs

* fixe finetune scripts

* finish model docs

* finish docs

* remove auto model for now

* add require torch

* remove solved todos

* integrate sylvains suggestions

* sams comments

* correct mistake on purpose

* improve README

* Add generation test cases

* fix rag token

* clean token generate

* fix test

* add note to test

* fix attention mask

* add t5 test for rag

* Fix handling prefix in finetune.py

* don't overwrite index_name

Co-authored-by: Patrick Lewis <plewis@fb.com>
Co-authored-by: Aleksandra Piktus <piktus@devfair0141.h2.fair>
Co-authored-by: Aleksandra Piktus <piktus@learnfair5102.h2.fair>
Co-authored-by: Aleksandra Piktus <piktus@learnfair5067.h2.fair>
Co-authored-by: Your Name <you@example.com>
Co-authored-by: Patrick von Platen <patrick.v.platen@gmail.com>
Co-authored-by: Quentin Lhoest <lhoest.q@gmail.com>
2020-09-22 18:29:58 +02:00

157 lines
6.0 KiB
Python

import json
import os
import shutil
import sys
import tempfile
import unittest
from unittest import TestCase
from unittest.mock import patch
import numpy as np
from datasets import Dataset
import faiss
from transformers.configuration_bart import BartConfig
from transformers.configuration_dpr import DPRConfig
from transformers.configuration_rag import RagConfig
from transformers.file_utils import is_datasets_available, is_faiss_available, is_psutil_available, is_torch_available
from transformers.tokenization_bart import BartTokenizer
from transformers.tokenization_bert import VOCAB_FILES_NAMES as DPR_VOCAB_FILES_NAMES
from transformers.tokenization_dpr import DPRQuestionEncoderTokenizer
from transformers.tokenization_roberta import VOCAB_FILES_NAMES as BART_VOCAB_FILES_NAMES
sys.path.append(os.path.join(os.getcwd())) # noqa: E402 # noqa: E402 # isort:skip
from examples.rag.distributed_retriever import RagPyTorchDistributedRetriever # noqa: E402 # isort:skip
def require_distributed_retrieval(test_case):
"""
Decorator marking a test that requires a set of dependencies necessary for pefrorm retrieval with
:class:`~transformers.RagRetriever`.
These tests are skipped when respective libraries are not installed.
"""
if not (is_torch_available() and is_datasets_available() and is_faiss_available() and is_psutil_available()):
test_case = unittest.skip("test requires PyTorch, Datasets, Faiss, psutil")(test_case)
return test_case
@require_distributed_retrieval
class RagRetrieverTest(TestCase):
def setUp(self):
self.tmpdirname = tempfile.mkdtemp()
self.retrieval_vector_size = 8
# DPR tok
vocab_tokens = [
"[UNK]",
"[CLS]",
"[SEP]",
"[PAD]",
"[MASK]",
"want",
"##want",
"##ed",
"wa",
"un",
"runn",
"##ing",
",",
"low",
"lowest",
]
dpr_tokenizer_path = os.path.join(self.tmpdirname, "dpr_tokenizer")
os.makedirs(dpr_tokenizer_path, exist_ok=True)
self.vocab_file = os.path.join(dpr_tokenizer_path, DPR_VOCAB_FILES_NAMES["vocab_file"])
with open(self.vocab_file, "w", encoding="utf-8") as vocab_writer:
vocab_writer.write("".join([x + "\n" for x in vocab_tokens]))
# BART tok
vocab = [
"l",
"o",
"w",
"e",
"r",
"s",
"t",
"i",
"d",
"n",
"\u0120",
"\u0120l",
"\u0120n",
"\u0120lo",
"\u0120low",
"er",
"\u0120lowest",
"\u0120newer",
"\u0120wider",
"<unk>",
]
vocab_tokens = dict(zip(vocab, range(len(vocab))))
merges = ["#version: 0.2", "\u0120 l", "\u0120l o", "\u0120lo w", "e r", ""]
self.special_tokens_map = {"unk_token": "<unk>"}
bart_tokenizer_path = os.path.join(self.tmpdirname, "bart_tokenizer")
os.makedirs(bart_tokenizer_path, exist_ok=True)
self.vocab_file = os.path.join(bart_tokenizer_path, BART_VOCAB_FILES_NAMES["vocab_file"])
self.merges_file = os.path.join(bart_tokenizer_path, BART_VOCAB_FILES_NAMES["merges_file"])
with open(self.vocab_file, "w", encoding="utf-8") as fp:
fp.write(json.dumps(vocab_tokens) + "\n")
with open(self.merges_file, "w", encoding="utf-8") as fp:
fp.write("\n".join(merges))
def get_dpr_tokenizer(self) -> DPRQuestionEncoderTokenizer:
return DPRQuestionEncoderTokenizer.from_pretrained(os.path.join(self.tmpdirname, "dpr_tokenizer"))
def get_bart_tokenizer(self) -> BartTokenizer:
return BartTokenizer.from_pretrained(os.path.join(self.tmpdirname, "bart_tokenizer"))
def tearDown(self):
shutil.rmtree(self.tmpdirname)
def get_dummy_pytorch_distributed_retriever(self, init_retrieval, port=12345) -> RagPyTorchDistributedRetriever:
dataset = Dataset.from_dict(
{
"id": ["0", "1"],
"text": ["foo", "bar"],
"title": ["Foo", "Bar"],
"embeddings": [np.ones(self.retrieval_vector_size), 2 * np.ones(self.retrieval_vector_size)],
}
)
dataset.add_faiss_index("embeddings", string_factory="Flat", metric_type=faiss.METRIC_INNER_PRODUCT)
config = RagConfig(
retrieval_vector_size=self.retrieval_vector_size,
question_encoder=DPRConfig().to_dict(),
generator=BartConfig().to_dict(),
)
with patch("transformers.retrieval_rag.load_dataset") as mock_load_dataset:
mock_load_dataset.return_value = dataset
retriever = RagPyTorchDistributedRetriever(
config,
question_encoder_tokenizer=self.get_dpr_tokenizer(),
generator_tokenizer=self.get_bart_tokenizer(),
)
if init_retrieval:
retriever.init_retrieval(port)
return retriever
def test_pytorch_distributed_retriever_retrieve(self):
n_docs = 1
retriever = self.get_dummy_pytorch_distributed_retriever(init_retrieval=True)
hidden_states = np.array(
[np.ones(self.retrieval_vector_size), -np.ones(self.retrieval_vector_size)], dtype=np.float32
)
retrieved_doc_embeds, doc_ids, doc_dicts = retriever.retrieve(hidden_states, n_docs=n_docs)
self.assertEqual(retrieved_doc_embeds.shape, (2, n_docs, self.retrieval_vector_size))
self.assertEqual(len(doc_dicts), 2)
self.assertEqual(sorted(doc_dicts[0]), ["embeddings", "id", "text", "title"])
self.assertEqual(len(doc_dicts[0]["id"]), n_docs)
self.assertEqual(doc_dicts[0]["id"][0], "1") # max inner product is reached with second doc
self.assertEqual(doc_dicts[1]["id"][0], "0") # max inner product is reached with first doc
self.assertListEqual(list(doc_ids), [1, 0])