transformers/docs
Alex Brooks 623d395aff
Add Granite Speech Support (#36801)
* First pass at speech granite

Add encoder / projector, rename things

* Combine into one model file with causal lm outputs for forward

* Add loss calc

* Fix config loading

Signed-off-by: Alex-Brooks <Alex.brooks@ibm.com>

* Split new / old loading logic

* Use transformers integration for loading peft adapters

* Add generation wrapper for selective lora enablement

* Add note for qformer encoder automodel

* Guard torch/audio imports in feature extractor

* Handle granite speech autoclasses

* Handle optional deps in package structure for granite speech

* Add granite pretrained model def for init

* Add dummy objects for torch/torchaudio

* Add tests for granite speech processor

* Minor formatting fixes and refactoring

* Add options for falling back to config in forward

* Tentative model docstrings for granite speech

* Fix config type

* Remove legacy load

* Allow non-lora variants for granite speech

* Override weight tying for llm

* Use text config instead of llm config

* Add output embeddings getter to fix weight tying

* Fix relative imports

* computing the number of audio features, based on the raw audio sequence.

* collating audio inputs, and keeping the original lengths.

* asserted we have text. otherwise we can't specify the audio special token.

* assering the number of audio-symbols/audios match correctly.
running get validated_audios only when audio is present

* indentation bugfix + supporting different feature lengths when expanding audio.

* redundant, done in _get_validated_text

* adapting the tests:
- we must have text (not either audio or text)
- _get_num_audio_features takes a list of raw lengths, provided it insetad.

* Minor cleanup, remove unused import

* Add more tests for batch feature processing

* Allow setting offset in rel position embeddings

* Add config option for warning if peft is not installed w/ lora

* Port blip2 qformer code into granite speech

* Add sad test for numpy arr processing

* Allow numpy arrays / tuples in granite speech processor

* Fix config type for projector

* - pad instead of creating a zeros tensor, to keep the original dtype/device (support bfloat16)
- cast input_features to the model dtype (support bfloat16)

* merge Blip2QFormerConfig to GraniteSpeechProjectorConfig

* prevent a crash when re-saving/loading the model (line 109)

* consider additional edge cases during preprocessing.

* consider additional edge cases during preprocessing.

* add features mask for batched inference (bugfix)

* Minor refactor, remove multiaudio processor tests

* Add set input/output embeddings for granite speech

* Fix feature dim check in processor test

* Pop input features in embed test for granite speech

* Small fixes for test edge cases

Add granite speech to seq2seq causal lm mapping names

* Add small tests for granite speech model

* Fix data parallelism test

* Standardize model class names

* Fix check for copies

* Fix misaligned init check

* Skip granite speech in checkpoint check

* Use default for tie_word_embeddings in granite speech

* Fix non documentation granite speech repo issues

* Fix comments and docstring checks

* Add placeholder docs for granite speech

* Fix test naming collision

* Code formatting

* Rerun torch dummy obj regen

* Fix save pretrained for granite speech

* Import sorting

* Fix tests typo

* Remove offset hack

* Pass args through encoder config

* Remove unused prune heads from blip2

* removing einsum. replaced with explicit multiplication (relative positional encodings) and sdpa attention.

* remove Sequential from ConformerFeedForward and ConformerConvModule. + fix for sdpa attention

* remove GraniteSpeechConformerScale

* rename to hidden_states

* rename conformer layers to self.layers, remove the first linear from the list to keep the list homogenous.

* move pre-norm to the attention/feedforward blocks (avoid complex module wrapping)

* adding pre_norm into forward

* feature extractor refactoring to resemble how it's done in phi4multimodal.

* rename feature_extractor to audio_processor

* bugfix: input_feature_mask fix to get the exact number tokens.

* Fix pytest decorator in processor test

* Add (disabled) integration tests for granite speech

* Fix handling of optional feature masking

* Loosen validation in processing for vLLM compatability

* Formatting fixes

* Update init structure to mirror llama

* Make granite speech projector generic

* Update test config to reflect generic projector

* Formatting fixes

* Fix typos, add license

* Fix undefined var in input processing

* Cleanup and expose ctc encoder

* Add missing config docstrings

* Better var names, type hints, etc

* Set attn context size in init

* Add max pos emb to encoder config

* Cleanup feature extractor

* Add granite speech architecture details

* Remove granite speech qformer ref

* Add paper link, explicit calc for qkv

* Calculate padding directly in depthwise conv1d init

* Raise value error instead of asserting

* Reorder class defs (classes used at top)

* Precompute relpos distances

* Run formatting

* Pass attention distances through forward

* Apply suggestions from code review

Co-authored-by: eustlb <94853470+eustlb@users.noreply.github.com>

* Add todo for using common batch feature extraction

* Rename audios/features

* Ensure chat template may be provided to processor

* Move granite speech docs to audio models

* Add todos for input proc refactoring

* Fix import order

* Guard torch import

* Use relative imports

* Require torch backend for processor in granite speech

* Add backend guards in feature extractor

---------

Signed-off-by: Alex-Brooks <Alex.brooks@ibm.com>
Co-authored-by: Avihu Dekel <avihu.dekel@ibm.com>
Co-authored-by: eustlb <94853470+eustlb@users.noreply.github.com>
2025-04-11 18:52:00 +02:00
..
source Add Granite Speech Support (#36801) 2025-04-11 18:52:00 +02:00
README.md Apply linting to the important code blocks to make it readable (#34449) 2024-10-28 10:48:18 -07:00
TRANSLATING.md UPDATE Documentation for #TRANSLATING.md Documentation into Multiple Languages.(Changes made) (#34226) 2024-10-30 12:37:39 -07:00

Generating the documentation

To generate the documentation, you first have to build it. Several packages are necessary to build the doc, you can install them with the following command, at the root of the code repository:

pip install -e ".[docs]"

Then you need to install our special tool that builds the documentation:

pip install git+https://github.com/huggingface/doc-builder

NOTE

You only need to generate the documentation to inspect it locally (if you're planning changes and want to check how they look before committing for instance). You don't have to commit the built documentation.


Building the documentation

Once you have setup the doc-builder and additional packages, you can generate the documentation by typing the following command:

doc-builder build transformers docs/source/en/ --build_dir ~/tmp/test-build

You can adapt the --build_dir to set any temporary folder that you prefer. This command will create it and generate the MDX files that will be rendered as the documentation on the main website. You can inspect them in your favorite Markdown editor.

Previewing the documentation

To preview the docs, first install the watchdog module with:

pip install watchdog

Then run the following command:

doc-builder preview {package_name} {path_to_docs}

For example:

doc-builder preview transformers docs/source/en/

The docs will be viewable at http://localhost:3000. You can also preview the docs once you have opened a PR. You will see a bot add a comment to a link where the documentation with your changes lives.


NOTE

The preview command only works with existing doc files. When you add a completely new file, you need to update _toctree.yml & restart preview command (ctrl-c to stop it & call doc-builder preview ... again).


Adding a new element to the navigation bar

Accepted files are Markdown (.md).

Create a file with its extension and put it in the source directory. You can then link it to the toc-tree by putting the filename without the extension in the _toctree.yml file.

Renaming section headers and moving sections

It helps to keep the old links working when renaming the section header and/or moving sections from one document to another. This is because the old links are likely to be used in Issues, Forums, and Social media and it'd make for a much more superior user experience if users reading those months later could still easily navigate to the originally intended information.

Therefore, we simply keep a little map of moved sections at the end of the document where the original section was. The key is to preserve the original anchor.

So if you renamed a section from: "Section A" to "Section B", then you can add at the end of the file:

Sections that were moved:

[ <a href="#section-b">Section A</a><a id="section-a"></a> ]

and of course, if you moved it to another file, then:

Sections that were moved:

[ <a href="../new-file#section-b">Section A</a><a id="section-a"></a> ]

Use the relative style to link to the new file so that the versioned docs continue to work.

For an example of a rich moved section set please see the very end of the Trainer doc.

Writing Documentation - Specification

The huggingface/transformers documentation follows the Google documentation style for docstrings, although we can write them directly in Markdown.

Adding a new tutorial

Adding a new tutorial or section is done in two steps:

  • Add a new file under ./source. This file can either be ReStructuredText (.rst) or Markdown (.md).
  • Link that file in ./source/_toctree.yml on the correct toc-tree.

Make sure to put your new file under the proper section. It's unlikely to go in the first section (Get Started), so depending on the intended targets (beginners, more advanced users, or researchers) it should go in sections two, three, or four.

Translating

When translating, refer to the guide at ./TRANSLATING.md.

Adding a new model

When adding a new model:

  • Create a file xxx.md or under ./source/model_doc (don't hesitate to copy an existing file as template).
  • Link that file in ./source/_toctree.yml.
  • Write a short overview of the model:
    • Overview with paper & authors
    • Paper abstract
    • Tips and tricks and how to use it best
  • Add the classes that should be linked in the model. This generally includes the configuration, the tokenizer, and every model of that class (the base model, alongside models with additional heads), both in PyTorch and TensorFlow. The order is generally:
    • Configuration
    • Tokenizer
    • PyTorch base model
    • PyTorch head models
    • TensorFlow base model
    • TensorFlow head models
    • Flax base model
    • Flax head models

These classes should be added using our Markdown syntax. Usually as follows:

## XXXConfig

[[autodoc]] XXXConfig

This will include every public method of the configuration that is documented. If for some reason you wish for a method not to be displayed in the documentation, you can do so by specifying which methods should be in the docs:

## XXXTokenizer

[[autodoc]] XXXTokenizer
    - build_inputs_with_special_tokens
    - get_special_tokens_mask
    - create_token_type_ids_from_sequences
    - save_vocabulary

If you just want to add a method that is not documented (for instance magic methods like __call__ are not documented by default) you can put the list of methods to add in a list that contains all:

## XXXTokenizer

[[autodoc]] XXXTokenizer
    - all
    - __call__

Writing source documentation

Values that should be put in code should either be surrounded by backticks: `like so`. Note that argument names and objects like True, None, or any strings should usually be put in code.

When mentioning a class, function, or method, it is recommended to use our syntax for internal links so that our tool adds a link to its documentation with this syntax: [`XXXClass`] or [`function`]. This requires the class or function to be in the main package.

If you want to create a link to some internal class or function, you need to provide its path. For instance: [`utils.ModelOutput`]. This will be converted into a link with utils.ModelOutput in the description. To get rid of the path and only keep the name of the object you are linking to in the description, add a ~: [`~utils.ModelOutput`] will generate a link with ModelOutput in the description.

The same works for methods so you can either use [`XXXClass.method`] or [`~XXXClass.method`].

Defining arguments in a method

Arguments should be defined with the Args: (or Arguments: or Parameters:) prefix, followed by a line return and an indentation. The argument should be followed by its type, with its shape if it is a tensor, a colon, and its description:

    Args:
        n_layers (`int`): The number of layers of the model.

If the description is too long to fit in one line, another indentation is necessary before writing the description after the argument.

Here's an example showcasing everything so far:

    Args:
        input_ids (`torch.LongTensor` of shape `(batch_size, sequence_length)`):
            Indices of input sequence tokens in the vocabulary.

            Indices can be obtained using [`AlbertTokenizer`]. See [`~PreTrainedTokenizer.encode`] and
            [`~PreTrainedTokenizer.__call__`] for details.

            [What are input IDs?](../glossary#input-ids)

For optional arguments or arguments with defaults we follow the following syntax: imagine we have a function with the following signature:

def my_function(x: str = None, a: float = 1):

then its documentation should look like this:

    Args:
        x (`str`, *optional*):
            This argument controls ...
        a (`float`, *optional*, defaults to 1):
            This argument is used to ...

Note that we always omit the "defaults to `None`" when None is the default for any argument. Also note that even if the first line describing your argument type and its default gets long, you can't break it on several lines. You can however, write as many lines as you want in the indented description (see the example above with input_ids).

Writing a multi-line code block

Multi-line code blocks can be useful for displaying examples. They are done between two lines of three backticks as usual in Markdown:

```
# first line of code
# second line
# etc
```

We follow the doctest syntax for the examples to automatically test the results to stay consistent with the library.

Writing a return block

The return block should be introduced with the Returns: prefix, followed by a line return and an indentation. The first line should be the type of the return, followed by a line return. No need to indent further for the elements building the return.

Here's an example of a single value return:

    Returns:
        `List[int]`: A list of integers in the range [0, 1] --- 1 for a special token, 0 for a sequence token.

Here's an example of a tuple return, comprising several objects:

    Returns:
        `tuple(torch.FloatTensor)` comprising various elements depending on the configuration ([`BertConfig`]) and inputs:
        - ** loss** (*optional*, returned when `masked_lm_labels` is provided) `torch.FloatTensor` of shape `(1,)` --
          Total loss is the sum of the masked language modeling loss and the next sequence prediction (classification) loss.
        - **prediction_scores** (`torch.FloatTensor` of shape `(batch_size, sequence_length, config.vocab_size)`) --
          Prediction scores of the language modeling head (scores for each vocabulary token before SoftMax).

Adding an image

Due to the rapidly growing repository, it is important to make sure that no files that would significantly weigh down the repository are added. This includes images, videos, and other non-text files. We prefer to leverage a hf.co hosted dataset like the ones hosted on hf-internal-testing in which to place these files and reference them by URL. We recommend putting them in the following dataset: huggingface/documentation-images. If an external contribution, feel free to add the images to your PR and ask a Hugging Face member to migrate your images to this dataset.

Styling the docstring

We have an automatic script running with the make style comment that will make sure that:

  • the docstrings fully take advantage of the line width
  • all code examples are formatted using black, like the code of the Transformers library

This script may have some weird failures if you made a syntax mistake or if you uncover a bug. Therefore, it's recommended to commit your changes before running make style, so you can revert the changes done by that script easily.

Testing documentation examples

Good documentation often comes with an example of how a specific function or class should be used. Each model class should contain at least one example showcasing how to use this model class in inference. E.g. the class Wav2Vec2ForCTC includes an example of how to transcribe speech to text in the docstring of its forward function.

Writing documentation examples

The syntax for Example docstrings can look as follows:

    Example:

    >>> from transformers import Wav2Vec2Processor, Wav2Vec2ForCTC
    >>> from datasets import load_dataset
    >>> import torch

    >>> dataset = load_dataset("hf-internal-testing/librispeech_asr_demo", "clean", split="validation")
    >>> dataset = dataset.sort("id")
    >>> sampling_rate = dataset.features["audio"].sampling_rate

    >>> processor = Wav2Vec2Processor.from_pretrained("facebook/wav2vec2-base-960h")
    >>> model = Wav2Vec2ForCTC.from_pretrained("facebook/wav2vec2-base-960h")

    >>> # audio file is decoded on the fly
    >>> inputs = processor(dataset[0]["audio"]["array"], sampling_rate=sampling_rate, return_tensors="pt")
    >>> with torch.no_grad():
    ...     logits = model(**inputs).logits
    >>> predicted_ids = torch.argmax(logits, dim=-1)

    >>> # transcribe speech
    >>> transcription = processor.batch_decode(predicted_ids)
    >>> transcription[0]
    'MISTER QUILTER IS THE APOSTLE OF THE MIDDLE CLASSES AND WE ARE GLAD TO WELCOME HIS GOSPEL'

The docstring should give a minimal, clear example of how the respective model is to be used in inference and also include the expected (ideally sensible) output. Often, readers will try out the example before even going through the function or class definitions. Therefore, it is of utmost importance that the example works as expected.

Docstring testing

To do so each example should be included in the doctests. We use pytests' doctest integration to verify that all of our examples run correctly. For Transformers, the doctests are run on a daily basis via GitHub Actions as can be seen here.

For Python files

Run all the tests in the docstrings of a given file with the following command, here is how we test the modeling file of Wav2Vec2 for instance:

pytest --doctest-modules src/transformers/models/wav2vec2/modeling_wav2vec2.py -sv --doctest-continue-on-failure

If you want to isolate a specific docstring, just add :: after the file name then type the whole path of the function/class/method whose docstring you want to test. For instance, here is how to just test the forward method of Wav2Vec2ForCTC:

pytest --doctest-modules src/transformers/models/wav2vec2/modeling_wav2vec2.py::transformers.models.wav2vec2.modeling_wav2vec2.Wav2Vec2ForCTC.forward -sv --doctest-continue-on-failure

For Markdown files

You can test locally a given file with this command (here testing the quicktour):

pytest --doctest-modules docs/source/quicktour.md -sv --doctest-continue-on-failure --doctest-glob="*.md"

Writing doctests

Here are a few tips to help you debug the doctests and make them pass:

  • The outputs of the code need to match the expected output exactly, so make sure you have the same outputs. In particular doctest will see a difference between single quotes and double quotes, or a missing parenthesis. The only exceptions to that rule are:
    • whitespace: one give whitespace (space, tabulation, new line) is equivalent to any number of whitespace, so you can add new lines where there are spaces to make your output more readable.
    • numerical values: you should never put more than 4 or 5 digits to expected results as different setups or library versions might get you slightly different results. doctest is configured to ignore any difference lower than the precision to which you wrote (so 1e-4 if you write 4 digits).
  • Don't leave a block of code that is very long to execute. If you can't make it fast, you can either not use the doctest syntax on it (so that it's ignored), or if you want to use the doctest syntax to show the results, you can add a comment # doctest: +SKIP at the end of the lines of code too long to execute
  • Each line of code that produces a result needs to have that result written below. You can ignore an output if you don't want to show it in your code example by adding a comment # doctest: +IGNORE_RESULT at the end of the line of code producing it.