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* Rebase ESM PR and update all file formats * Fix test relative imports * Add __init__.py to the test dir * Disable gradient checkpointing * Remove references to TFESM... FOR NOW >:| * Remove completed TODOs from tests * Convert docstrings to mdx, fix-copies from BERT * fix-copies for the README and index * Update ESM's __init__.py to the modern format * Add to _toctree.yml * Ensure we correctly copy the pad_token_id from the original ESM model * Ensure we correctly copy the pad_token_id from the original ESM model * Tiny grammar nitpicks * Make the layer norm after embeddings an optional flag * Make the layer norm after embeddings an optional flag * Update the conversion script to handle other model classes * Remove token_type_ids entirely, fix attention_masking and add checks to convert_esm.py * Break the copied from link from BertModel.forward to remove token_type_ids * Remove debug array saves * Begin ESM-2 porting * Add a hacky workaround for the precision issue in original repo * Code cleanup * Remove unused checkpoint conversion code * Remove unused checkpoint conversion code * Fix copyright notices * Get rid of all references to the TF weights conversion * Remove token_type_ids from the tests * Fix test code * Update src/transformers/__init__.py Co-authored-by: Sylvain Gugger <35901082+sgugger@users.noreply.github.com> * Update src/transformers/__init__.py Co-authored-by: Sylvain Gugger <35901082+sgugger@users.noreply.github.com> * Update README.md Co-authored-by: Sylvain Gugger <35901082+sgugger@users.noreply.github.com> * Add credit * Remove _ args and __ kwargs in rotary embedding * Assertively remove asserts * Replace einsum with torch.outer() * Fix docstring formatting * Remove assertions in tokenization * Add paper citation to ESMModel docstring * Move vocab list to single line * Remove ESMLayer from init * Add Facebook copyrights * Clean up RotaryEmbedding docstring * Fix docstring formatting * Fix docstring for config object * Add explanation for new config methods * make fix-copies * Rename all the ESM- classes to Esm- * Update conversion script to allow pushing to hub * Update tests to point at my repo for now * Set config properly for tests * Remove the gross hack that forced loss of precision in inv_freq and instead copy the data from the model being converted * make fixup * Update expected values for slow tests * make fixup * Remove EsmForCausalLM for now * Remove EsmForCausalLM for now * Fix padding idx test * Updated README and docs with ESM-1b and ESM-2 separately (#19221) * Updated README and docs with ESM-1b and ESM-2 separately * Update READMEs, longer entry with 3 citations * make fix-copies Co-authored-by: Your Name <you@example.com> Co-authored-by: Sylvain Gugger <35901082+sgugger@users.noreply.github.com> Co-authored-by: Tom Sercu <tsercu@fb.com> Co-authored-by: Your Name <you@example.com>
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Python
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Python