* Add first draft
* Update conversion script
* Improve conversion script
* Improve conversion script some more
* Add conditional embeddings
* Add initial decoder
* Fix activation function of decoder
* Make decoder outputs match original implementation
* Make decoder outputs match original implementation
* Add more copied from statements
* Improve model outputs
* Fix auto tokenizer file
* Fix more tests
* Add test
* Improve README and docs, improve conditional embeddings
* Fix more tests
* Remove print statements
* Remove initial embeddings
* Improve conversion script
* Add interpolation of position embeddings
* Finish addition of interpolation of position embeddings
* Add support for refined checkpoint
* Fix refined checkpoint
* Remove unused parameter
* Improve conversion script
* Add support for training
* Fix conversion script
* Add CLIPSegFeatureExtractor
* Fix processor
* Fix CLIPSegProcessor
* Fix conversion script
* Fix most tests
* Fix equivalence test
* Fix README
* Add model to doc tests
* Use better variable name
* Convert other checkpoint as well
* Update config, add link to paper
* Add docs
* Update organization
* Replace base_model_prefix with clip
* Fix base_model_prefix
* Fix checkpoint of config
* Fix config checkpoint
* Remove file
* Use logits for output
* Fix tests
Co-authored-by: Niels Rogge <nielsrogge@Nielss-MacBook-Pro.local>
* initial commit
* First draft that gets outputs without crashing!
* Add all the ported openfold dependencies
* testing
* Restructure config files for ESMFold
* Debugging to find output discrepancies
* Mainly style
* Make model runnable without extra deps
* Remove utils and merge them to the modeling file
* Use correct gelu and remove some debug prints
* More cleanup
* Update esm docs
* Update conversion script to support ESMFold properly
* Port some top-level changes from ESMFold repo
* Expand EsmFold docstrings
* Make attention_mask optional (default to all 1s)
* Add inference test for ESMFold
* Use config and not n kwargs
* Add modeling output class
* Remove einops
* Remove chunking in ESM FFN
* Update tests for ESMFold
* Quality
* REpo consistency
* Remove tree dependency from ESMFold
* make fixup
* Add an error in case my structure map function breaks later
* Remove needless code
* Stop auto-casting the LM to float16 so CPU tests pass
* Stop auto-casting the LM to float16 so CPU tests pass
* Final test updates
* Split test file
* Copyright and quality
* Unpin PyTorch to see built doc
* Fix config file to_dict() method
* Add some docstrings to the output
* Skip TF checkpoint tests for ESM until we reupload those
* make fixup
* More docstrings
* Unpin to get even with main
* Flag example to write
Co-authored-by: Sylvain Gugger <Sylvain.gugger@gmail.com>
* Add Example docstring to DebertaConfig
* Add configuration_deberta to documentation_tests
* Add microsoft/deberta-base to example docstring
* Fix example docstring mistake
* Change the import order of the model and configuration classes
* Add (with random weights) in the comment before model initialization
* Add configuration_wavlm to doctest