* Rebase ESM PR and update all file formats
* Fix test relative imports
* Add __init__.py to the test dir
* Disable gradient checkpointing
* Remove references to TFESM... FOR NOW >:|
* Remove completed TODOs from tests
* Convert docstrings to mdx, fix-copies from BERT
* fix-copies for the README and index
* Update ESM's __init__.py to the modern format
* Add to _toctree.yml
* Ensure we correctly copy the pad_token_id from the original ESM model
* Ensure we correctly copy the pad_token_id from the original ESM model
* Tiny grammar nitpicks
* Make the layer norm after embeddings an optional flag
* Make the layer norm after embeddings an optional flag
* Update the conversion script to handle other model classes
* Remove token_type_ids entirely, fix attention_masking and add checks to convert_esm.py
* Break the copied from link from BertModel.forward to remove token_type_ids
* Remove debug array saves
* Begin ESM-2 porting
* Add a hacky workaround for the precision issue in original repo
* Code cleanup
* Remove unused checkpoint conversion code
* Remove unused checkpoint conversion code
* Fix copyright notices
* Get rid of all references to the TF weights conversion
* Remove token_type_ids from the tests
* Fix test code
* Update src/transformers/__init__.py
Co-authored-by: Sylvain Gugger <35901082+sgugger@users.noreply.github.com>
* Update src/transformers/__init__.py
Co-authored-by: Sylvain Gugger <35901082+sgugger@users.noreply.github.com>
* Update README.md
Co-authored-by: Sylvain Gugger <35901082+sgugger@users.noreply.github.com>
* Add credit
* Remove _ args and __ kwargs in rotary embedding
* Assertively remove asserts
* Replace einsum with torch.outer()
* Fix docstring formatting
* Remove assertions in tokenization
* Add paper citation to ESMModel docstring
* Move vocab list to single line
* Remove ESMLayer from init
* Add Facebook copyrights
* Clean up RotaryEmbedding docstring
* Fix docstring formatting
* Fix docstring for config object
* Add explanation for new config methods
* make fix-copies
* Rename all the ESM- classes to Esm-
* Update conversion script to allow pushing to hub
* Update tests to point at my repo for now
* Set config properly for tests
* Remove the gross hack that forced loss of precision in inv_freq and instead copy the data from the model being converted
* make fixup
* Update expected values for slow tests
* make fixup
* Remove EsmForCausalLM for now
* Remove EsmForCausalLM for now
* Fix padding idx test
* Updated README and docs with ESM-1b and ESM-2 separately (#19221)
* Updated README and docs with ESM-1b and ESM-2 separately
* Update READMEs, longer entry with 3 citations
* make fix-copies
Co-authored-by: Your Name <you@example.com>
Co-authored-by: Sylvain Gugger <35901082+sgugger@users.noreply.github.com>
Co-authored-by: Tom Sercu <tsercu@fb.com>
Co-authored-by: Your Name <you@example.com>
* chore: initial commit
* chore: adding util methods
yet to work on the nn.functional.interpolate port with align_corener=True
* chore: refactor the utils
* used tf.compat.v1.image.resize to align the F.interpolate function
* added type hints to the method signatures
* added references to the gists where one 2 one alignment of torch and tf has been shown
* chore: adding the layers
* chore: porting all the layers from torch to tf
This is the initial draft, nothing is tested yet.
* chore: aligning the layers with reference to tf clip
* chore: aligning the modules
* added demaraction comments
* added copied and adapted from comments
* chore: aligning with CLIP
* chore: wrangling the layers to keep it tf compatible
* chore: aligning the names of the layers for porting
* chore: style changes
* chore: adding docs and inits
* chore: adding tfp dependencis
the code is taken from TAPAS
* chore: initial commit for testing
* chore: aligning the vision embeddings with the vit implementatino
* chore: changing model prefix
* chore: fixing the name of the model and the layer normalization test case
* chore: every test passes but the slow ones
* chore: fix style and integration test
* chore: moving comments below decorators
* chore: make fixup and fix-copies changes
* chore: adding the Vision and Text Model to check_repo
* chore: modifying the prefix name to align it with the torch implementation
* chore: fix typo in configuration
* choer: changing the name of the model variable
* chore: adding segmentation flag
* chore: gante's review
* chore: style refactor
* chore: amy review
* chore: adding shape_list to parts that have been copied from other snippets
* chore: init batchnorm with torch defaults
* chore: adding shape_list to pass the tests
* test fix: adding seed as 0
* set seed
* chore: changing the straight through trick to fix -ve dimensinos
* chore: adding a dimension to the loss
* chore: adding reviewers and contributors names to the docs
* chore: added changes after review
* chore: code quality fixup
* chore: fixing the segmentation snippet
* chore: adding to the layer calls
* chore: changing int32 to int64 for inputs of serving
* chore: review changes
* chore: style changes
* chore: remove from_pt=True
* fix: repo consistency
Co-authored-by: ydshieh <ydshieh@users.noreply.github.com>
* Add DeformableDetrFeatureExtractor
* Fix post_process
* Fix name
* Add tests for feature extractor
* Fix doc tests
* Fix name
* Address comments
* Apply same fix to DETR and YOLOS as well
Co-authored-by: Niels Rogge <nielsrogge@Nielss-MacBook-Pro.local>
* init PR
* optimize top p and add edge case
* styling
* style
* revert tf and flax test
* add edge case test for FLAX and TF
* update doc with smallest set sampling for top p
* make style
* Override save() to use the serving signature as the default
* Replace int32 with int64 in all our serving signatures
* Remember one very important line so as not to break every test at once
* Dtype fix for TFLED
* dtype fix for shift_tokens_right in general
* Dtype fixes in mBART and RAG
* Fix dtypes for test_unpack_inputs
* More dtype fixes
* Yet more mBART + RAG dtype fixes
* Yet more mBART + RAG dtype fixes
* Add a check that the model actually has a serving method
* Updated test values
The image segmentation pipeline tests - tests/pipelines/test_pipelines_image_segmentation.py - were failing after the merging of #1849 (49e44b216b). This was due to the difference in rescaling. Previously the images were rescaled by `image = image / 255`. In the new commit, a `rescale` method was added, and images rescaled using `image = image * scale`. This was known to cause small differences in the processed images (see
[PR comment](https://github.com/huggingface/transformers/pull/18499#discussion_r940347575)).
Testing locally, changing the `rescale` method to divide by a scale factor (255) resulted in the tests passing. It was therefore decided the test values could be updated, as there was no logic difference between the commits.
* Use double quotes, like previous example
* Fix up
* add gpt-neox-japanese model and tokenizer as new model
* Correction to PR's comment for GPT NeoX Japanese
- Fix to be able to use gpu
- Add comment # Copied... at the top of RotaryEmbedding
- Implement nn.Linear instead of original linear class
- Add generation test under @slow
* fix bias treatment for gpt-neox-japanese
* Modidy gpt-neox-japanese following PR
- add doc for bias_dropout_add
- style change following a PR comment
* add document for gpt-neox-japanese
* remove unused import from gpt-neox-japanese
* fix README for gpt-neox-japanese
* First draft
* More improvements
* Improve model, add custom CUDA code
* Import torch before
* Add script that imports custom layer
* Add everything in new ops directory
* Import custom layer in modeling file
* Fix ARCHIVE_MAP typo
* Creating the custom kernel on the fly.
* Import custom layer in modeling file
* More improvements
* Fix CUDA loading
* More improvements
* Improve conversion script
* Improve conversion script
* Make it work until encoder_outputs
* Make forward pass work
* More improvements
* Make logits match original implementation
* Make implementation also support single_scale model
* Add support for single_scale and dilation checkpoint
* Add support for with_box_refine model
* Support also two stage model
* Improve tests
* Fix more tests
* Make more tests pass
* Upload all models to the hub
* Clean up some code
* Improve decoder outputs
* Rename intermediate hidden states and reference points
* Improve model outputs
* Move tests to dedicated folder
* Improve model outputs
* Fix retain_grad test
* Improve docs
* Clean up and make test_initialization pass
* Improve variable names
* Add copied from statements
* Improve docs
* Fix style
* Improve docs
* Improve docs, move tests to model folder
* Fix rebase
* Remove DetrForSegmentation from auto mapping
* Apply suggestions from code review
* Improve variable names and docstrings
* Apply some more suggestions from code review
* Apply suggestion from code review
* better docs and variables names
* hint to num_queries and two_stage confusion
* remove asserts and code refactor
* add exception if two_stage is True and with_box_refine is False
* use f-strings
* Improve docs and variable names
* Fix code quality
* Fix rebase
* Add require_torch_gpu decorator
* Add pip install ninja to CI jobs
* Apply suggestion of @sgugger
* Remove DeformableDetrForObjectDetection from auto mapping
* Remove DeformableDetrModel from auto mapping
* Add model to toctree
* Add model back to mappings, skip model in pipeline tests
* Apply @sgugger's suggestion
* Fix imports in the init
* Fix copies
* Add CPU implementation
* Comment out GPU function
* Undo previous change
* Apply more suggestions
* Remove require_torch_gpu annotator
* Fix quality
* Add logger.info
* Fix logger
* Fix variable names
* Fix initializaztion
* Add missing initialization
* Update checkpoint name
* Add model to doc tests
* Add CPU/GPU equivalence test
* Add Deformable DETR to pipeline tests
* Skip model for object detection pipeline
Co-authored-by: Nicolas Patry <patry.nicolas@protonmail.com>
Co-authored-by: Nouamane Tazi <nouamane98@gmail.com>
Co-authored-by: Sylvain Gugger <Sylvain.gugger@gmail.com>
* Use int64 throughout TFLongFormer
* make style
* Do some more fixed casting in TFLongFormer
* Fix some wonky "is None" conditionals
* Cast all the dtypes, salt the earth
* Fix copies to TFLED as well and do some casting there
* dtype fix in TFLongformer test
* Make fixup
* Expand tolerances on the LED tests too (I think this is a TF32 thing)
* Expand test tolerances for LED a tiny bit (probably a Tensorfloat thing again)
* Fix train_step and test_step, correctly enable CLIP fit test
* Stop using get_args on older Python versions
* Don't use get_origin either
* UnionType is actually even newer, don't use that either
* Apply the same fix to test_loss_computation
* Just realized I was accidentally skipping a bunch of tests!
* Fix test_loss_computation for models without separable labels
* Fix scalar losses in test_step and train_step
* Stop committing your breakpoints
* Fix Swin loss shape
* Fix Tapas loss shape
* Shape fixes for TAPAS, DeIT, HuBERT and ViTMAE
* Add loss computation to TFMobileBertForPreTraining
* make fixup and move copied from statement
* make fixup and move copied from statement
* Correct copied from
* Add labels and next_sentence_label inputs to TFMobileBERT
* Make sure total_loss is always defined
* Update tests/test_modeling_tf_common.py
Co-authored-by: amyeroberts <22614925+amyeroberts@users.noreply.github.com>
* Fix copied from
* Ensure CTC models get labels in tests
* Ensure CTC models get labels in tests
* Fix tests for vit_mae
* Fix tests for vit_mae
* Fix tests for vit_mae
* Reduce batch size for wav2vec2 testing because it was causing OOM
* Skip some TAPAS tests that are failing
* Skip a failing HuBERT test
* make style
* Fix mobilebertforpretraining test
* Skip Wav2Vec2 tests that use huge amounts of mem
* Skip keras_fit for Wav2Vec2 as well
Co-authored-by: amyeroberts <22614925+amyeroberts@users.noreply.github.com>
