* Allow non-special tokens to be added
* Add test, fix token adding code
* Revert changes to id_to_token and token_to_id
* Update the ESM tokenizer to be a bit more standardized
* Update src/transformers/models/esm/tokenization_esm.py
Co-authored-by: Arthur <48595927+ArthurZucker@users.noreply.github.com>
---------
Co-authored-by: Arthur <48595927+ArthurZucker@users.noreply.github.com>
* try to stylify using ruff
* might need to remove these changes?
* use ruf format andruff check
* use isinstance instead of type comparision
* use # fmt: skip
* use # fmt: skip
* nits
* soem styling changes
* update ci job
* nits isinstance
* more files update
* nits
* more nits
* small nits
* check and format
* revert wrong changes
* actually use formatter instead of checker
* nits
* well docbuilder is overwriting this commit
* revert notebook changes
* try to nuke docbuilder
* style
* fix feature exrtaction test
* remve `indent-width = 4`
* fixup
* more nits
* update the ruff version that we use
* style
* nuke docbuilder styling
* leve the print for detected changes
* nits
* Remove file I/O
Co-authored-by: charliermarsh
<charlie.r.marsh@gmail.com>
* style
* nits
* revert notebook changes
* Add # fmt skip when possible
* Add # fmt skip when possible
* Fix
* More ` # fmt: skip` usage
* More ` # fmt: skip` usage
* More ` # fmt: skip` usage
* NIts
* more fixes
* fix tapas
* Another way to skip
* Recommended way
* Fix two more fiels
* Remove asynch
Remove asynch
---------
Co-authored-by: charliermarsh <charlie.r.marsh@gmail.com>
* Rebase ESM PR and update all file formats
* Fix test relative imports
* Add __init__.py to the test dir
* Disable gradient checkpointing
* Remove references to TFESM... FOR NOW >:|
* Remove completed TODOs from tests
* Convert docstrings to mdx, fix-copies from BERT
* fix-copies for the README and index
* Update ESM's __init__.py to the modern format
* Add to _toctree.yml
* Ensure we correctly copy the pad_token_id from the original ESM model
* Ensure we correctly copy the pad_token_id from the original ESM model
* Tiny grammar nitpicks
* Make the layer norm after embeddings an optional flag
* Make the layer norm after embeddings an optional flag
* Update the conversion script to handle other model classes
* Remove token_type_ids entirely, fix attention_masking and add checks to convert_esm.py
* Break the copied from link from BertModel.forward to remove token_type_ids
* Remove debug array saves
* Begin ESM-2 porting
* Add a hacky workaround for the precision issue in original repo
* Code cleanup
* Remove unused checkpoint conversion code
* Remove unused checkpoint conversion code
* Fix copyright notices
* Get rid of all references to the TF weights conversion
* Remove token_type_ids from the tests
* Fix test code
* Update src/transformers/__init__.py
Co-authored-by: Sylvain Gugger <35901082+sgugger@users.noreply.github.com>
* Update src/transformers/__init__.py
Co-authored-by: Sylvain Gugger <35901082+sgugger@users.noreply.github.com>
* Update README.md
Co-authored-by: Sylvain Gugger <35901082+sgugger@users.noreply.github.com>
* Add credit
* Remove _ args and __ kwargs in rotary embedding
* Assertively remove asserts
* Replace einsum with torch.outer()
* Fix docstring formatting
* Remove assertions in tokenization
* Add paper citation to ESMModel docstring
* Move vocab list to single line
* Remove ESMLayer from init
* Add Facebook copyrights
* Clean up RotaryEmbedding docstring
* Fix docstring formatting
* Fix docstring for config object
* Add explanation for new config methods
* make fix-copies
* Rename all the ESM- classes to Esm-
* Update conversion script to allow pushing to hub
* Update tests to point at my repo for now
* Set config properly for tests
* Remove the gross hack that forced loss of precision in inv_freq and instead copy the data from the model being converted
* make fixup
* Update expected values for slow tests
* make fixup
* Remove EsmForCausalLM for now
* Remove EsmForCausalLM for now
* Fix padding idx test
* Updated README and docs with ESM-1b and ESM-2 separately (#19221)
* Updated README and docs with ESM-1b and ESM-2 separately
* Update READMEs, longer entry with 3 citations
* make fix-copies
Co-authored-by: Your Name <you@example.com>
Co-authored-by: Sylvain Gugger <35901082+sgugger@users.noreply.github.com>
Co-authored-by: Tom Sercu <tsercu@fb.com>
Co-authored-by: Your Name <you@example.com>
