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| 68c748b06e |
@@ -2,9 +2,8 @@ name: FHIR IG CI/CD Pipeline with Version Persistence
|
||||
|
||||
on:
|
||||
push:
|
||||
branches: [ main, develop ]
|
||||
tags:
|
||||
- 'v*.*.*' # Trigger on version tags like v0.3.0
|
||||
- 'v*.*.*'
|
||||
pull_request:
|
||||
branches: [ main ]
|
||||
|
||||
@@ -14,357 +13,647 @@ env:
|
||||
|
||||
jobs:
|
||||
build-ig:
|
||||
runs-on: ubuntu-latest
|
||||
runs-on: fhir-runner
|
||||
|
||||
steps:
|
||||
- name: Checkout repository
|
||||
uses: actions/checkout@v3
|
||||
with:
|
||||
fetch-depth: 0
|
||||
- name: Checkout repository
|
||||
uses: actions/checkout@v3
|
||||
with:
|
||||
fetch-depth: 0
|
||||
|
||||
- name: Extract version from IG
|
||||
id: version
|
||||
run: |
|
||||
# Extract version from ImplementationGuide resource
|
||||
VERSION=$(grep -oP '<version value="\K[^"]+' input/bd.fhir.core.xml | head -1)
|
||||
- name: Extract version from IG
|
||||
id: version
|
||||
run: |
|
||||
VERSION=$(grep -oP '<version value="\K[^"]+' input/bd.fhir.core.xml | head -1)
|
||||
|
||||
if [ -z "$VERSION" ]; then
|
||||
echo "ERROR: Could not extract version from ImplementationGuide XML"
|
||||
exit 1
|
||||
fi
|
||||
|
||||
echo "Extracted version: $VERSION"
|
||||
echo "version=$VERSION" >> $GITHUB_OUTPUT
|
||||
|
||||
# Determine if this is a release build (git tag) or dev build
|
||||
if [[ "$GITHUB_REF" == refs/tags/v* ]]; then
|
||||
BUILD_TYPE="release"
|
||||
TAG_VERSION="${GITHUB_REF#refs/tags/v}"
|
||||
|
||||
# Verify tag matches IG version
|
||||
if [ "$TAG_VERSION" != "$VERSION" ]; then
|
||||
echo "ERROR: Git tag version ($TAG_VERSION) doesn't match IG version ($VERSION)"
|
||||
if [ -z "$VERSION" ]; then
|
||||
echo "ERROR: Could not extract version from ImplementationGuide XML"
|
||||
exit 1
|
||||
fi
|
||||
else
|
||||
BUILD_TYPE="dev"
|
||||
fi
|
||||
|
||||
echo "build_type=$BUILD_TYPE" >> $GITHUB_OUTPUT
|
||||
echo "Build type: $BUILD_TYPE"
|
||||
echo "Extracted version: $VERSION"
|
||||
echo "version=$VERSION" >> $GITHUB_OUTPUT
|
||||
|
||||
- name: Install Docker CLI
|
||||
run: |
|
||||
apt-get update
|
||||
apt-get install -y docker.io
|
||||
docker --version
|
||||
if [[ "$GITHUB_REF" == refs/tags/v* ]]; then
|
||||
BUILD_TYPE="release"
|
||||
TAG_VERSION="${GITHUB_REF#refs/tags/v}"
|
||||
|
||||
- name: Build FHIR IG
|
||||
run: |
|
||||
echo "Building FHIR IG version ${{ steps.version.outputs.version }}..."
|
||||
if [ "$TAG_VERSION" != "$VERSION" ]; then
|
||||
echo "ERROR: Git tag version ($TAG_VERSION) doesn't match IG version ($VERSION)"
|
||||
exit 1
|
||||
fi
|
||||
else
|
||||
BUILD_TYPE="dev"
|
||||
fi
|
||||
|
||||
CONTAINER_ID=$(docker create \
|
||||
hl7fhir/ig-publisher-base:latest \
|
||||
/bin/bash -c "cp -r /home/publisher/ig /tmp/build && cd /tmp/build && _updatePublisher.sh -y && _genonce.sh")
|
||||
echo "build_type=$BUILD_TYPE" >> $GITHUB_OUTPUT
|
||||
echo "Build type: $BUILD_TYPE"
|
||||
|
||||
echo "Container ID: $CONTAINER_ID"
|
||||
- name: Prepare package-list.json and history.xml for IG Publisher
|
||||
run: |
|
||||
VERSION="${{ steps.version.outputs.version }}"
|
||||
BUILD_TYPE="${{ steps.version.outputs.build_type }}"
|
||||
DATE=$(date +%Y-%m-%d)
|
||||
|
||||
docker cp $(pwd)/. $CONTAINER_ID:/home/publisher/ig/
|
||||
docker start -a $CONTAINER_ID
|
||||
EXIT_CODE=$?
|
||||
export VERSION DATE BUILD_TYPE
|
||||
|
||||
# Copy outputs
|
||||
echo "Copying outputs from container..."
|
||||
docker cp $CONTAINER_ID:/tmp/build/output ./output || echo "Warning: No output directory"
|
||||
docker cp $CONTAINER_ID:/tmp/build/fsh-generated ./fsh-generated || echo "No FSH generated"
|
||||
docker cp $CONTAINER_ID:/tmp/build/input-cache ./input-cache || echo "No input-cache"
|
||||
docker cp $CONTAINER_ID:/tmp/build/temp ./temp || echo "No temp directory"
|
||||
echo "📋 Preparing package-list.json and history.xml for IG Publisher..."
|
||||
|
||||
if [ $EXIT_CODE -ne 0 ]; then
|
||||
echo "Build failed, showing logs:"
|
||||
docker logs $CONTAINER_ID
|
||||
docker rm $CONTAINER_ID
|
||||
exit 1
|
||||
fi
|
||||
if [ ! -f "package-list.json" ]; then
|
||||
echo "⚠️ package-list.json not found in repo root"
|
||||
echo "Creating initial package-list.json..."
|
||||
cat > package-list.json << 'PKGEOF'
|
||||
{
|
||||
"package-id": "bd.fhir.core",
|
||||
"title": "Bangladesh Core FHIR Implementation Guide",
|
||||
"canonical": "https://fhir.dghs.gov.bd/core",
|
||||
"introduction": "The Bangladesh Core FHIR IG defines national base profiles, value sets, and extensions for health data interoperability.",
|
||||
"list": [
|
||||
{
|
||||
"version": "current",
|
||||
"desc": "Continuous Integration Build (latest in version control)",
|
||||
"path": "https://fhir.dghs.gov.bd/core/",
|
||||
"status": "ci-build",
|
||||
"current": true
|
||||
}
|
||||
]
|
||||
}
|
||||
PKGEOF
|
||||
fi
|
||||
|
||||
docker rm $CONTAINER_ID
|
||||
python3 << 'PYEOF'
|
||||
import json
|
||||
import os
|
||||
import sys
|
||||
|
||||
if [ ! -f "output/index.html" ]; then
|
||||
echo "ERROR: Build failed - no index.html"
|
||||
exit 1
|
||||
fi
|
||||
version = os.environ.get('VERSION', '')
|
||||
date = os.environ.get('DATE', '')
|
||||
build_type = os.environ.get('BUILD_TYPE', '')
|
||||
|
||||
echo "✅ Build successful!"
|
||||
with open('package-list.json', 'r', encoding='utf-8') as f:
|
||||
pkg_list = json.load(f)
|
||||
|
||||
- name: Update package-list.json and package-feed.xml for releases
|
||||
if: steps.version.outputs.build_type == 'release'
|
||||
run: |
|
||||
VERSION="${{ steps.version.outputs.version }}"
|
||||
DATE=$(date +%Y-%m-%d)
|
||||
DATETIME=$(date -u +%Y-%m-%dT%H:%M:%SZ)
|
||||
if 'list' not in pkg_list or not isinstance(pkg_list['list'], list):
|
||||
print("ERROR: package-list.json does not contain a valid 'list' array")
|
||||
sys.exit(1)
|
||||
|
||||
# Update package-list.json and package-feed.xml
|
||||
cat > update-registry-files.py << 'EOF'
|
||||
import json
|
||||
import sys
|
||||
import xml.etree.ElementTree as ET
|
||||
from datetime import datetime
|
||||
current_entries = [e for e in pkg_list['list'] if e.get('version') == 'current']
|
||||
if not current_entries:
|
||||
pkg_list['list'].insert(0, {
|
||||
"version": "current",
|
||||
"desc": "Continuous Integration Build (latest in version control)",
|
||||
"path": "https://fhir.dghs.gov.bd/core/",
|
||||
"status": "ci-build",
|
||||
"current": True
|
||||
})
|
||||
|
||||
version = sys.argv[1]
|
||||
date = sys.argv[2]
|
||||
datetime_iso = sys.argv[3]
|
||||
if build_type == 'release':
|
||||
version_entry = None
|
||||
for e in pkg_list['list']:
|
||||
if e.get('version') == version:
|
||||
version_entry = e
|
||||
break
|
||||
if version_entry is None:
|
||||
new_entry = {
|
||||
"version": version,
|
||||
"date": date,
|
||||
"desc": f"Release {version}",
|
||||
"path": f"https://fhir.dghs.gov.bd/core/{version}/",
|
||||
"status": "trial-use",
|
||||
"sequence": "STU 1"
|
||||
}
|
||||
|
||||
# ========== Update package-list.json ==========
|
||||
with open('package-list.json', 'r') as f:
|
||||
pkg_list = json.load(f)
|
||||
insert_index = 1
|
||||
for i, entry in enumerate(pkg_list['list']):
|
||||
if entry.get('version') == 'current':
|
||||
insert_index = i + 1
|
||||
break
|
||||
|
||||
# Update current build path
|
||||
for entry in pkg_list['list']:
|
||||
if entry['version'] == 'current':
|
||||
entry['path'] = 'https://fhir.dghs.gov.bd/core/'
|
||||
break
|
||||
pkg_list['list'].insert(insert_index, new_entry)
|
||||
print(f"✅ Added version {version} to package-list.json")
|
||||
else:
|
||||
print(f"ℹ️ Version {version} already exists in package-list.json")
|
||||
else:
|
||||
print("ℹ️ Dev build - using existing package-list.json without release modification")
|
||||
|
||||
# Check if this version already exists
|
||||
version_exists = any(e['version'] == version for e in pkg_list['list'])
|
||||
with open('package-list.json', 'w', encoding='utf-8') as f:
|
||||
json.dump(pkg_list, f, indent=2, ensure_ascii=False)
|
||||
PYEOF
|
||||
|
||||
if not version_exists:
|
||||
# Add new version entry
|
||||
new_entry = {
|
||||
"version": version,
|
||||
"date": date,
|
||||
"desc": f"Release {version}",
|
||||
"path": f"https://fhir.dghs.gov.bd/core/{version}/",
|
||||
"status": "trial-use",
|
||||
"sequence": "STU 1"
|
||||
}
|
||||
# Insert after 'current' entry
|
||||
pkg_list['list'].insert(1, new_entry)
|
||||
else:
|
||||
# Update existing entry
|
||||
for entry in pkg_list['list']:
|
||||
if entry['version'] == version:
|
||||
entry['date'] = date
|
||||
entry['path'] = f"https://fhir.dghs.gov.bd/core/{version}/"
|
||||
break
|
||||
echo "🔍 Validating package-list.json..."
|
||||
python3 -m json.tool package-list.json > /dev/null && echo "✅ Valid JSON" || (echo "❌ Invalid JSON!" && exit 1)
|
||||
|
||||
with open('output/package-list.json', 'w') as f:
|
||||
json.dump(pkg_list, f, indent=2)
|
||||
echo "📂 Ensuring package-list.json is in required locations..."
|
||||
mkdir -p input
|
||||
cp package-list.json input/package-list.json
|
||||
|
||||
print(f"✅ Updated package-list.json with version {version}")
|
||||
echo "📝 Generating static history.xml from package-list.json..."
|
||||
mkdir -p input/pagecontent
|
||||
|
||||
# ========== Update package-feed.xml ==========
|
||||
# Register namespaces
|
||||
ET.register_namespace('', 'http://www.w3.org/2005/Atom')
|
||||
python3 << 'PYEOF'
|
||||
import json
|
||||
import os
|
||||
from html import escape
|
||||
|
||||
# Parse existing feed
|
||||
tree = ET.parse('package-feed.xml')
|
||||
root = tree.getroot()
|
||||
ns = {'atom': 'http://www.w3.org/2005/Atom'}
|
||||
os.makedirs('input/pagecontent', exist_ok=True)
|
||||
|
||||
# Update feed updated timestamp
|
||||
updated_elem = root.find('atom:updated', ns)
|
||||
if updated_elem is not None:
|
||||
updated_elem.text = datetime_iso
|
||||
with open('package-list.json', 'r', encoding='utf-8') as f:
|
||||
pkg_list = json.load(f)
|
||||
|
||||
# Check if entry for this version already exists
|
||||
entry_exists = False
|
||||
for entry in root.findall('atom:entry', ns):
|
||||
title = entry.find('atom:title', ns)
|
||||
if title is not None and version in title.text:
|
||||
entry_exists = True
|
||||
# Update existing entry timestamp
|
||||
entry_updated = entry.find('atom:updated', ns)
|
||||
if entry_updated is not None:
|
||||
entry_updated.text = datetime_iso
|
||||
break
|
||||
xml = '''<?xml version="1.0" encoding="UTF-8"?>
|
||||
<div xmlns="http://www.w3.org/1999/xhtml">
|
||||
|
||||
# If entry doesn't exist, create new one
|
||||
if not entry_exists:
|
||||
new_entry = ET.Element('{http://www.w3.org/2005/Atom}entry')
|
||||
<p>This page provides the version history for the Bangladesh Core FHIR Implementation Guide.</p>
|
||||
|
||||
title = ET.SubElement(new_entry, '{http://www.w3.org/2005/Atom}title')
|
||||
title.text = f"bd.fhir.core version {version}"
|
||||
<p>For a machine-readable version history see <a href="package-list.json">package-list.json</a>.</p>
|
||||
|
||||
link = ET.SubElement(new_entry, '{http://www.w3.org/2005/Atom}link')
|
||||
link.set('rel', 'alternate')
|
||||
link.set('href', f"https://fhir.dghs.gov.bd/core/{version}/")
|
||||
<p><b>Published Versions</b></p>
|
||||
|
||||
entry_id = ET.SubElement(new_entry, '{http://www.w3.org/2005/Atom}id')
|
||||
entry_id.text = f"https://fhir.dghs.gov.bd/core/{version}/"
|
||||
<table class="grid table table-striped table-bordered table-hover">
|
||||
<thead>
|
||||
<tr>
|
||||
<th>Version</th>
|
||||
<th>Date</th>
|
||||
<th>Status</th>
|
||||
<th>Description</th>
|
||||
</tr>
|
||||
</thead>
|
||||
<tbody>
|
||||
'''
|
||||
|
||||
entry_updated = ET.SubElement(new_entry, '{http://www.w3.org/2005/Atom}updated')
|
||||
entry_updated.text = datetime_iso
|
||||
def version_key(v):
|
||||
try:
|
||||
return tuple(int(x) for x in v.split('.'))
|
||||
except:
|
||||
return (0,)
|
||||
|
||||
summary = ET.SubElement(new_entry, '{http://www.w3.org/2005/Atom}summary')
|
||||
summary.text = f"Release {version} of Bangladesh Core FHIR Implementation Guide"
|
||||
published = [
|
||||
e for e in pkg_list['list']
|
||||
if e.get('version') and e.get('version') != "current"
|
||||
]
|
||||
|
||||
# Insert new entry at the beginning (after feed metadata)
|
||||
# Find the position after the last feed-level element
|
||||
insert_pos = 0
|
||||
for i, child in enumerate(root):
|
||||
if child.tag.endswith('entry'):
|
||||
insert_pos = i
|
||||
break
|
||||
insert_pos = i + 1
|
||||
# Sort newest version first
|
||||
published.sort(
|
||||
key=lambda e: version_key(e.get("version", "0.0.0")),
|
||||
reverse=True
|
||||
)
|
||||
|
||||
root.insert(insert_pos, new_entry)
|
||||
published_found = False
|
||||
first_row = True
|
||||
|
||||
# Write updated feed
|
||||
tree.write('output/package-feed.xml', encoding='utf-8', xml_declaration=True)
|
||||
print(f"✅ Updated package-feed.xml with version {version}")
|
||||
for entry in published:
|
||||
published_found = True
|
||||
|
||||
EOF
|
||||
version = escape(entry.get('version', 'Unknown'))
|
||||
date = escape(entry.get('date', 'N/A'))
|
||||
desc = escape(entry.get('desc', ''))
|
||||
path = escape(entry.get('path', '#'))
|
||||
|
||||
python3 update-registry-files.py "$VERSION" "$DATE" "$DATETIME"
|
||||
status_val = entry.get('status', 'unknown')
|
||||
|
||||
# Copy updated files
|
||||
cp output/package-list.json package-list.json
|
||||
cp output/package-feed.xml package-feed.xml
|
||||
if status_val == "trial-use":
|
||||
status = '<span class="badge bg-info">Trial Use</span>'
|
||||
elif status_val == "normative":
|
||||
status = '<span class="badge bg-success">Normative</span>'
|
||||
else:
|
||||
status = f'<span class="badge bg-secondary">{escape(status_val)}</span>'
|
||||
|
||||
echo "📋 Updated registry files (package-list.json and package-feed.xml)"
|
||||
badge = '<span class="badge bg-success">Latest</span> ' if first_row else ''
|
||||
|
||||
- name: Prepare deployment artifact
|
||||
run: |
|
||||
VERSION="${{ steps.version.outputs.version }}"
|
||||
BUILD_TYPE="${{ steps.version.outputs.build_type }}"
|
||||
xml += f'''
|
||||
<tr>
|
||||
<td><a href="{path}">{badge}{version}</a></td>
|
||||
<td>{date}</td>
|
||||
<td>{status}</td>
|
||||
<td>{desc}</td>
|
||||
</tr>
|
||||
'''
|
||||
|
||||
first_row = False
|
||||
|
||||
if not published_found:
|
||||
xml += '''
|
||||
<tr>
|
||||
<td colspan="4">No published versions available yet.</td>
|
||||
</tr>
|
||||
'''
|
||||
|
||||
xml += '''
|
||||
</tbody>
|
||||
</table>
|
||||
|
||||
<p class="lead"><b>Continuous Integration Build</b></p>
|
||||
'''
|
||||
|
||||
current_entry = None
|
||||
for entry in pkg_list['list']:
|
||||
if entry.get('version') == 'current':
|
||||
current_entry = entry
|
||||
break
|
||||
|
||||
if current_entry:
|
||||
path = escape(current_entry.get('path', pkg_list.get('canonical', '') + '/'))
|
||||
xml += f'''
|
||||
<p>The latest development build is available at:
|
||||
<a href="{path}">{path}</a></p>
|
||||
'''
|
||||
else:
|
||||
xml += '''
|
||||
<p><i>No CI build entry found in package-list.json.</i></p>
|
||||
'''
|
||||
|
||||
xml += '''
|
||||
</div>
|
||||
'''
|
||||
|
||||
with open('input/pagecontent/history.xml', 'w', encoding='utf-8') as f:
|
||||
f.write(xml)
|
||||
|
||||
print("✅ Generated static history.xml")
|
||||
print(f" File location: {os.path.abspath('input/pagecontent/history.xml')}")
|
||||
print(f" File size: {os.path.getsize('input/pagecontent/history.xml')} bytes")
|
||||
PYEOF
|
||||
|
||||
if [ -f "input/pagecontent/history.xml" ]; then
|
||||
echo "✅ Verified: history.xml exists"
|
||||
echo " First 20 lines:"
|
||||
head -20 input/pagecontent/history.xml
|
||||
else
|
||||
echo "❌ ERROR: history.xml was not created!"
|
||||
exit 1
|
||||
fi
|
||||
|
||||
echo "✅ Pre-build preparation complete:"
|
||||
echo " - Root: $(pwd)/package-list.json"
|
||||
echo " - Input: $(pwd)/input/package-list.json"
|
||||
echo " - History: $(pwd)/input/pagecontent/history.xml"
|
||||
echo "==============================="
|
||||
echo "PACKAGE LIST USED FOR BUILD:"
|
||||
cat package-list.json
|
||||
echo "-------------------------------"
|
||||
echo "INPUT COPY:"
|
||||
cat input/package-list.json
|
||||
echo "==============================="
|
||||
|
||||
- name: Emergency Disk Cleanup
|
||||
run: |
|
||||
echo "Disk usage before:"
|
||||
df -h
|
||||
|
||||
echo "Clearing tool cache..."
|
||||
rm -rf /opt/hostedtoolcache/* || true
|
||||
|
||||
rm -rf /usr/share/dotnet || true
|
||||
rm -rf /usr/local/lib/android || true
|
||||
rm -rf /opt/ghc || true
|
||||
rm -rf ~/.fhir/packages || true
|
||||
|
||||
echo "Disk usage after:"
|
||||
df -h
|
||||
|
||||
- name: Install Docker CLI
|
||||
run: |
|
||||
apt-get update
|
||||
apt-get install -y docker.io
|
||||
docker --version
|
||||
|
||||
- name: Preload previous IG package for comparison
|
||||
run: |
|
||||
echo "Detecting previous version..."
|
||||
export VERSION="${{ steps.version.outputs.version }}"
|
||||
PREV_VERSION=$(python3 <<'PY'
|
||||
import json
|
||||
import os
|
||||
|
||||
current_build = os.environ.get("VERSION")
|
||||
|
||||
with open("package-list.json") as f:
|
||||
data = json.load(f)
|
||||
|
||||
def parse(v):
|
||||
try:
|
||||
return tuple(int(x) for x in v.split("."))
|
||||
except:
|
||||
return (0,)
|
||||
|
||||
versions = [
|
||||
v["version"]
|
||||
for v in data["list"]
|
||||
if v.get("version") not in ("current", current_build)
|
||||
]
|
||||
|
||||
versions.sort(key=parse, reverse=True)
|
||||
|
||||
print(versions[0] if versions else "")
|
||||
PY
|
||||
)
|
||||
|
||||
if [ -z "$PREV_VERSION" ]; then
|
||||
echo "No previous version found. Skipping preload."
|
||||
exit 0
|
||||
fi
|
||||
|
||||
echo "Previous version detected: $PREV_VERSION"
|
||||
|
||||
mkdir -p previous-packages
|
||||
TMPDIR=$(mktemp -d)
|
||||
|
||||
URL="https://fhir.dghs.gov.bd/core/$PREV_VERSION/package.tgz"
|
||||
|
||||
echo "Downloading $URL"
|
||||
curl -fL "$URL" -o "$TMPDIR/package.tgz"
|
||||
|
||||
mkdir -p "previous-packages/bd.fhir.core#$PREV_VERSION"
|
||||
tar -xzf "$TMPDIR/package.tgz" -C "previous-packages/bd.fhir.core#$PREV_VERSION"
|
||||
|
||||
echo "Previous package cached:"
|
||||
ls previous-packages
|
||||
|
||||
- name: Build FHIR IG
|
||||
run: |
|
||||
echo "Building FHIR IG version ${{ steps.version.outputs.version }}..."
|
||||
|
||||
CONTAINER_ID=$(docker create \
|
||||
-v $(pwd)/previous-packages:/previous-packages \
|
||||
hl7fhir/ig-publisher-base:latest \
|
||||
/bin/bash -c "
|
||||
|
||||
mkdir -p /tmp/build
|
||||
cp -r /home/publisher/ig /tmp/build/ig
|
||||
|
||||
cd /tmp/build/ig
|
||||
|
||||
rm -f package-list.json
|
||||
|
||||
_updatePublisher.sh -y
|
||||
_genonce.sh
|
||||
")
|
||||
|
||||
echo "Container ID: $CONTAINER_ID"
|
||||
|
||||
docker cp "$(pwd)/." "$CONTAINER_ID:/home/publisher/ig/"
|
||||
echo "Mounted FHIR packages:"
|
||||
ls -R previous-packages || echo "No previous packages directory"
|
||||
docker start -a "$CONTAINER_ID"
|
||||
EXIT_CODE=$?
|
||||
|
||||
echo "Copying outputs from container..."
|
||||
docker cp "$CONTAINER_ID:/tmp/build/ig/output" ./output || echo "Warning: No output directory"
|
||||
docker cp "$CONTAINER_ID:/tmp/build/ig/fsh-generated" ./fsh-generated || echo "No FSH generated"
|
||||
docker cp "$CONTAINER_ID:/tmp/build/ig/input-cache" ./input-cache || echo "No input-cache"
|
||||
docker cp "$CONTAINER_ID:/tmp/build/ig/temp" ./temp || echo "No temp directory"
|
||||
|
||||
if [ $EXIT_CODE -ne 0 ]; then
|
||||
echo "Build failed, showing logs:"
|
||||
docker logs "$CONTAINER_ID"
|
||||
docker rm "$CONTAINER_ID"
|
||||
exit 1
|
||||
fi
|
||||
|
||||
docker rm "$CONTAINER_ID"
|
||||
|
||||
if [ ! -f "output/index.html" ]; then
|
||||
echo "ERROR: Build failed - no index.html"
|
||||
exit 1
|
||||
fi
|
||||
|
||||
echo ""
|
||||
echo "🔍 Checking for history.html..."
|
||||
if [ -f "output/history.html" ]; then
|
||||
echo "✅ history.html generated successfully!"
|
||||
echo "📄 history.html size: $(ls -lh output/history.html | awk '{print $5}')"
|
||||
else
|
||||
echo "⚠️ WARNING: history.html was NOT generated"
|
||||
echo "This might indicate an issue with the template or history.xml/package-list.json"
|
||||
fi
|
||||
echo "================================"
|
||||
echo "IG Publisher comparison log:"
|
||||
cat output/qa.compare.txt || echo "qa.compare.txt not found"
|
||||
echo "================================"
|
||||
echo "✅ Build successful!"
|
||||
|
||||
- name: Update package-feed.xml for releases
|
||||
if: steps.version.outputs.build_type == 'release'
|
||||
run: |
|
||||
VERSION="${{ steps.version.outputs.version }}"
|
||||
DATETIME=$(date -u +%Y-%m-%dT%H:%M:%SZ)
|
||||
|
||||
if [ ! -f "package-feed.xml" ]; then
|
||||
echo "⚠️ package-feed.xml not found, creating initial feed..."
|
||||
|
||||
cat > package-feed.xml <<EOF
|
||||
<?xml version="1.0" encoding="UTF-8"?>
|
||||
<feed xmlns="http://www.w3.org/2005/Atom">
|
||||
<title>bd.fhir.core</title>
|
||||
<id>https://fhir.dghs.gov.bd/core/package-feed.xml</id>
|
||||
<updated>$DATETIME</updated>
|
||||
</feed>
|
||||
EOF
|
||||
fi
|
||||
|
||||
cat > update-feed.py << 'EOF'
|
||||
import sys
|
||||
import xml.etree.ElementTree as ET
|
||||
|
||||
version = sys.argv[1]
|
||||
datetime_iso = sys.argv[2]
|
||||
|
||||
ET.register_namespace('', 'http://www.w3.org/2005/Atom')
|
||||
|
||||
tree = ET.parse('package-feed.xml')
|
||||
root = tree.getroot()
|
||||
ns = {'atom': 'http://www.w3.org/2005/Atom'}
|
||||
|
||||
updated_elem = root.find('atom:updated', ns)
|
||||
if updated_elem is not None:
|
||||
updated_elem.text = datetime_iso
|
||||
|
||||
entry_exists = False
|
||||
for entry in root.findall('atom:entry', ns):
|
||||
title = entry.find('atom:title', ns)
|
||||
if title is not None and version in (title.text or ''):
|
||||
entry_exists = True
|
||||
entry_updated = entry.find('atom:updated', ns)
|
||||
if entry_updated is not None:
|
||||
entry_updated.text = datetime_iso
|
||||
break
|
||||
|
||||
if not entry_exists:
|
||||
new_entry = ET.Element('{http://www.w3.org/2005/Atom}entry')
|
||||
|
||||
title = ET.SubElement(new_entry, '{http://www.w3.org/2005/Atom}title')
|
||||
title.text = f"bd.fhir.core version {version}"
|
||||
|
||||
link = ET.SubElement(new_entry, '{http://www.w3.org/2005/Atom}link')
|
||||
link.set('rel', 'alternate')
|
||||
link.set('href', f"https://fhir.dghs.gov.bd/core/{version}/")
|
||||
|
||||
entry_id = ET.SubElement(new_entry, '{http://www.w3.org/2005/Atom}id')
|
||||
entry_id.text = f"https://fhir.dghs.gov.bd/core/{version}/"
|
||||
|
||||
entry_updated = ET.SubElement(new_entry, '{http://www.w3.org/2005/Atom}updated')
|
||||
entry_updated.text = datetime_iso
|
||||
|
||||
summary = ET.SubElement(new_entry, '{http://www.w3.org/2005/Atom}summary')
|
||||
summary.text = f"Release {version} of Bangladesh Core FHIR Implementation Guide"
|
||||
|
||||
insert_pos = 0
|
||||
for i, child in enumerate(root):
|
||||
if child.tag.endswith('entry'):
|
||||
insert_pos = i
|
||||
break
|
||||
insert_pos = i + 1
|
||||
|
||||
root.insert(insert_pos, new_entry)
|
||||
|
||||
tree.write('output/package-feed.xml', encoding='utf-8', xml_declaration=True)
|
||||
print("✅ Updated package-feed.xml")
|
||||
EOF
|
||||
|
||||
python3 update-feed.py "$VERSION" "$DATETIME"
|
||||
|
||||
cp package-list.json output/package-list.json
|
||||
|
||||
echo "📋 Updated registry files"
|
||||
|
||||
- name: Prepare deployment artifact
|
||||
run: |
|
||||
VERSION="${{ steps.version.outputs.version }}"
|
||||
BUILD_TYPE="${{ steps.version.outputs.build_type }}"
|
||||
|
||||
# Create a tarball of the output
|
||||
if [ "$BUILD_TYPE" == "release" ]; then
|
||||
tar -czf ig-output.tar.gz -C output .
|
||||
else
|
||||
tar -czf ig-output.tar.gz -C output .
|
||||
fi
|
||||
|
||||
echo "version=$VERSION" > deployment.env
|
||||
echo "build_type=$BUILD_TYPE" >> deployment.env
|
||||
echo "build_date=$(date -u +%Y-%m-%dT%H:%M:%SZ)" >> deployment.env
|
||||
echo "version=$VERSION" > deployment.env
|
||||
echo "build_type=$BUILD_TYPE" >> deployment.env
|
||||
echo "build_date=$(date -u +%Y-%m-%dT%H:%M:%SZ)" >> deployment.env
|
||||
|
||||
ls -lh ig-output.tar.gz
|
||||
echo "📦 Output contents:"
|
||||
ls -lh output/ | grep -E "(history\.html|package-list\.json|package-feed\.xml|index\.html)" || echo "Some files may be missing"
|
||||
|
||||
- name: Upload artifact
|
||||
uses: actions/upload-artifact@v3
|
||||
with:
|
||||
name: ig-output
|
||||
path: |
|
||||
ig-output.tar.gz
|
||||
deployment.env
|
||||
package-list.json
|
||||
package-feed.xml
|
||||
retention-days: 30
|
||||
ls -lh ig-output.tar.gz
|
||||
|
||||
- name: Upload artifact
|
||||
uses: actions/upload-artifact@v3
|
||||
with:
|
||||
name: ig-output
|
||||
path: |
|
||||
ig-output.tar.gz
|
||||
deployment.env
|
||||
package-list.json
|
||||
package-feed.xml
|
||||
retention-days: 30
|
||||
|
||||
deploy:
|
||||
needs: build-ig
|
||||
runs-on: ubuntu-latest
|
||||
if: (github.ref == 'refs/heads/main' || startsWith(github.ref, 'refs/tags/v'))
|
||||
if: github.ref == 'refs/heads/main' || startsWith(github.ref, 'refs/tags/v')
|
||||
|
||||
steps:
|
||||
- name: Download artifact
|
||||
uses: actions/download-artifact@v3
|
||||
with:
|
||||
name: ig-output
|
||||
- name: Download artifact
|
||||
uses: actions/download-artifact@v3
|
||||
with:
|
||||
name: ig-output
|
||||
|
||||
- name: Load deployment env
|
||||
id: deploy_info
|
||||
run: |
|
||||
source deployment.env
|
||||
echo "version=$version" >> $GITHUB_OUTPUT
|
||||
echo "build_type=$build_type" >> $GITHUB_OUTPUT
|
||||
echo "build_date=$build_date" >> $GITHUB_OUTPUT
|
||||
- name: Load deployment env
|
||||
id: deploy_info
|
||||
run: |
|
||||
source deployment.env
|
||||
echo "version=$version" >> $GITHUB_OUTPUT
|
||||
echo "build_type=$build_type" >> $GITHUB_OUTPUT
|
||||
echo "build_date=$build_date" >> $GITHUB_OUTPUT
|
||||
|
||||
echo "Deploying version: $version"
|
||||
echo "Build type: $build_type"
|
||||
echo "Deploying version: $version"
|
||||
echo "Build type: $build_type"
|
||||
|
||||
- name: Deploy to server
|
||||
uses: appleboy/scp-action@v0.1.7
|
||||
with:
|
||||
host: ${{ secrets.DEPLOY_HOST }}
|
||||
username: ${{ secrets.DEPLOY_USER }}
|
||||
password: ${{ secrets.DEPLOY_PASSWORD }}
|
||||
port: ${{ secrets.DEPLOY_PORT || 22 }}
|
||||
source: "ig-output.tar.gz,deployment.env,package-list.json,package-feed.xml"
|
||||
target: "/tmp/fhir-ig-deploy/"
|
||||
- name: Deploy to server
|
||||
uses: appleboy/scp-action@v0.1.7
|
||||
with:
|
||||
host: ${{ secrets.DEPLOY_HOST }}
|
||||
username: ${{ secrets.DEPLOY_USER }}
|
||||
password: ${{ secrets.DEPLOY_PASSWORD }}
|
||||
port: ${{ secrets.DEPLOY_PORT || 22 }}
|
||||
source: "ig-output.tar.gz,deployment.env,package-list.json,package-feed.xml"
|
||||
target: "/tmp/fhir-ig-deploy/"
|
||||
|
||||
- name: Execute deployment on server
|
||||
uses: appleboy/ssh-action@v1.0.3
|
||||
with:
|
||||
host: ${{ secrets.DEPLOY_HOST }}
|
||||
username: ${{ secrets.DEPLOY_USER }}
|
||||
password: ${{ secrets.DEPLOY_PASSWORD }}
|
||||
port: ${{ secrets.DEPLOY_PORT || 22 }}
|
||||
script: |
|
||||
set -e
|
||||
- name: Execute deployment on server
|
||||
uses: appleboy/ssh-action@v1.0.3
|
||||
with:
|
||||
host: ${{ secrets.DEPLOY_HOST }}
|
||||
username: ${{ secrets.DEPLOY_USER }}
|
||||
password: ${{ secrets.DEPLOY_PASSWORD }}
|
||||
port: ${{ secrets.DEPLOY_PORT || 22 }}
|
||||
script: |
|
||||
set -e
|
||||
|
||||
# Load deployment info
|
||||
source /tmp/fhir-ig-deploy/deployment.env
|
||||
source /tmp/fhir-ig-deploy/deployment.env
|
||||
|
||||
echo "=========================================="
|
||||
echo "Deploying FHIR IG"
|
||||
echo "Version: $version"
|
||||
echo "Build Type: $build_type"
|
||||
echo "Build Date: $build_date"
|
||||
echo "=========================================="
|
||||
echo "=========================================="
|
||||
echo "Deploying FHIR IG"
|
||||
echo "Version: $version"
|
||||
echo "Build Type: $build_type"
|
||||
echo "Build Date: $build_date"
|
||||
echo "=========================================="
|
||||
|
||||
# Create version directory structure
|
||||
VERSIONS_DIR="/opt/fhir-ig/versions"
|
||||
mkdir -p "$VERSIONS_DIR"
|
||||
VERSIONS_DIR="/opt/fhir-ig/versions"
|
||||
mkdir -p "$VERSIONS_DIR"
|
||||
|
||||
# Determine target directory
|
||||
if [ "$build_type" == "release" ]; then
|
||||
TARGET_DIR="$VERSIONS_DIR/$version"
|
||||
echo "📦 Deploying release version to: $TARGET_DIR"
|
||||
else
|
||||
TARGET_DIR="$VERSIONS_DIR/dev"
|
||||
echo "🔧 Deploying dev build to: $TARGET_DIR"
|
||||
fi
|
||||
if [ "$build_type" = "release" ]; then
|
||||
TARGET_DIR="$VERSIONS_DIR/$version"
|
||||
echo "📦 Deploying release version to: $TARGET_DIR"
|
||||
else
|
||||
TARGET_DIR="$VERSIONS_DIR/dev"
|
||||
echo "🔧 Deploying dev build to: $TARGET_DIR"
|
||||
mkdir -p "$TARGET_DIR"
|
||||
echo "Cleaning old dev files..."
|
||||
rm -rf "$TARGET_DIR"/*
|
||||
fi
|
||||
|
||||
# Create target directory
|
||||
mkdir -p "$TARGET_DIR"
|
||||
mkdir -p "$TARGET_DIR"
|
||||
|
||||
# Extract IG output
|
||||
echo "Extracting IG output..."
|
||||
tar -xzf /tmp/fhir-ig-deploy/ig-output.tar.gz -C "$TARGET_DIR"
|
||||
echo "Extracting IG output..."
|
||||
tar -xzf /tmp/fhir-ig-deploy/ig-output.tar.gz -C "$TARGET_DIR"
|
||||
|
||||
# Copy package-list.json to root
|
||||
cp /tmp/fhir-ig-deploy/package-list.json "$VERSIONS_DIR/package-list.json"
|
||||
if [ -f "$TARGET_DIR/history.html" ]; then
|
||||
echo "✅ history.html deployed successfully"
|
||||
else
|
||||
echo "⚠️ WARNING: history.html not found in deployment"
|
||||
fi
|
||||
|
||||
# Copy package-feed.xml to root
|
||||
cp /tmp/fhir-ig-deploy/package-feed.xml "$VERSIONS_DIR/package-feed.xml"
|
||||
cp "$TARGET_DIR/package-list.json" "$VERSIONS_DIR/package-list.json"
|
||||
cp "$TARGET_DIR/package-feed.xml" "$VERSIONS_DIR/package-feed.xml"
|
||||
|
||||
# Update 'current' symlink for releases
|
||||
if [ "$build_type" == "release" ]; then
|
||||
echo "Updating 'current' symlink to point to $version"
|
||||
rm -f "$VERSIONS_DIR/current"
|
||||
ln -sf "$version" "$VERSIONS_DIR/current"
|
||||
fi
|
||||
cp "$TARGET_DIR/package-list.json" "/opt/fhir-ig/package-list.json"
|
||||
cp "$TARGET_DIR/package-feed.xml" "/opt/fhir-ig/package-feed.xml"
|
||||
|
||||
# Ensure nginx container is running with correct config
|
||||
cd /opt/fhir-ig
|
||||
if [ "$build_type" = "release" ]; then
|
||||
echo "Updating 'current' symlink to point to $version"
|
||||
rm -f "$VERSIONS_DIR/current"
|
||||
ln -sf "$version" "$VERSIONS_DIR/current"
|
||||
fi
|
||||
|
||||
# Download deployment files if they don't exist
|
||||
if [ ! -f "docker-compose.prod.yml" ]; then
|
||||
echo "ERROR: docker-compose.prod.yml not found!"
|
||||
echo "Please deploy the updated docker-compose.prod.yml and nginx.conf first"
|
||||
exit 1
|
||||
fi
|
||||
cd /opt/fhir-ig
|
||||
|
||||
# Restart nginx to pick up new content
|
||||
docker compose -f docker-compose.prod.yml restart fhir-ig || \
|
||||
docker compose -f docker-compose.prod.yml up -d
|
||||
if [ ! -f "docker-compose.prod.yml" ]; then
|
||||
echo "ERROR: docker-compose.prod.yml not found!"
|
||||
echo "Please deploy the updated docker-compose.prod.yml and nginx.conf first"
|
||||
exit 1
|
||||
fi
|
||||
|
||||
# Cleanup
|
||||
rm -rf /tmp/fhir-ig-deploy
|
||||
docker compose -f docker-compose.prod.yml up -d --force-recreate fhir-ig
|
||||
|
||||
echo "=========================================="
|
||||
echo "✅ Deployment completed successfully!"
|
||||
echo "Version $version is now available at:"
|
||||
if [ "$build_type" == "release" ]; then
|
||||
echo " - https://fhir.dghs.gov.bd/core/$version/"
|
||||
echo " - https://fhir.dghs.gov.bd/core/ (current)"
|
||||
else
|
||||
echo " - https://fhir.dghs.gov.bd/core/dev/"
|
||||
fi
|
||||
echo "=========================================="
|
||||
rm -rf /tmp/fhir-ig-deploy
|
||||
|
||||
# List all versions
|
||||
echo "Available versions:"
|
||||
ls -lh "$VERSIONS_DIR" | grep -v total
|
||||
echo "=========================================="
|
||||
echo "✅ Deployment completed successfully!"
|
||||
echo "Version $version is now available at:"
|
||||
if [ "$build_type" = "release" ]; then
|
||||
echo " - https://fhir.dghs.gov.bd/core/$version/"
|
||||
echo " - https://fhir.dghs.gov.bd/core/$version/history.html"
|
||||
echo " - https://fhir.dghs.gov.bd/core/ (current)"
|
||||
else
|
||||
echo " - https://fhir.dghs.gov.bd/core/dev/"
|
||||
fi
|
||||
echo "=========================================="
|
||||
|
||||
echo "Available versions:"
|
||||
ls -lh "$VERSIONS_DIR" | grep -v total
|
||||
@@ -13,7 +13,7 @@
|
||||
</extension>-->
|
||||
<url value="https://fhir.dghs.gov.bd/core/ImplementationGuide/bd.fhir.core"/>
|
||||
<!-- This version will propagate to all artifacts unless the "propagate-version" extension is overridden -->
|
||||
<version value="0.2.4"/>
|
||||
<version value="0.3.0"/>
|
||||
<name value="BangladeshCoreFHIRIG"/>
|
||||
<title value="Bangladesh Core FHIR Implementation Guide"/>
|
||||
<status value="active"/>
|
||||
@@ -102,6 +102,11 @@
|
||||
<title value="IG Change History"/>
|
||||
<generation value="html"/>
|
||||
</page>
|
||||
<page>
|
||||
<nameUrl value="history.html"/>
|
||||
<title value="Version History"/>
|
||||
<generation value="html"/>
|
||||
</page>
|
||||
</page>
|
||||
<!-- copyright year is a mandatory parameter -->
|
||||
<parameter>
|
||||
|
||||
@@ -1,8 +0,0 @@
|
||||
Profile: BDConditionProfile
|
||||
Parent: Condition
|
||||
Id: bd-condition
|
||||
Title: "ICD 11"
|
||||
Description: "Condition coded with ICD-11"
|
||||
|
||||
* code 1..1 MS
|
||||
* code from BDConditionICD11VS (preferred)
|
||||
68
input/fsh/extensions/icd11ClusterExpression.fsh
Normal file
68
input/fsh/extensions/icd11ClusterExpression.fsh
Normal file
@@ -0,0 +1,68 @@
|
||||
// ============================================================
|
||||
// icd11ClusterExpression.fsh
|
||||
// Extension for ICD-11 postcoordinated cluster expressions
|
||||
// Context: Coding (broad — usable across all ICD-11 coded elements)
|
||||
// ============================================================
|
||||
|
||||
Extension: ICD11ClusterExpression
|
||||
Id: icd11-cluster-expression
|
||||
Title: "ICD-11 Cluster Expression"
|
||||
Description: """
|
||||
Carries a postcoordinated ICD-11 cluster expression as a single string
|
||||
on a Coding element where the stem code alone is insufficient to fully
|
||||
represent the clinical concept.
|
||||
|
||||
A cluster expression combines a stem code with one or more satellite
|
||||
codes using the & operator (combination) or / operator (specificity).
|
||||
Example: NC72.Z&XK8G&XJ7ZH&XJ7YM
|
||||
- NC72.Z — stem: Fracture of femur, unspecified
|
||||
- XK8G — satellite: laterality
|
||||
- XJ7ZH — satellite: fracture subtype
|
||||
- XJ7YM — satellite: fracture open or closed
|
||||
|
||||
Usage rules:
|
||||
- SHALL only be present when the expression contains at least one
|
||||
satellite code joined by & or / operators.
|
||||
- Single stem codes SHALL be represented in Coding.code only and
|
||||
validated via OCL $validate-code. The cluster validator at
|
||||
https://icd11.dghs.gov.bd/cluster/validate explicitly rejects
|
||||
stem-only expressions.
|
||||
- The stem code in Coding.code SHALL match the leading stem code
|
||||
in this expression string.
|
||||
- Satellite codes in the cluster expression are exempt from the
|
||||
Diagnosis/Finding class restriction that applies to stem codes
|
||||
in Condition.code.
|
||||
- Cluster expressions SHALL be validated against the Bangladesh
|
||||
ICD-11 Cluster Validator at https://icd11.dghs.gov.bd/cluster/validate
|
||||
prior to submission to the HIE.
|
||||
|
||||
Cluster validator endpoint:
|
||||
POST https://icd11.dghs.gov.bd/cluster/validate
|
||||
Body: { "expression": "NC72.Z&XK8G&XJ7ZH&XJ7YM" }
|
||||
|
||||
This extension is not MustSupport and is not mandatory. It is present
|
||||
only when postcoordination is clinically required. Cluster expressions
|
||||
are typically sourced from the WHO Electronic Coding Tool (ECT) at the
|
||||
point of care.
|
||||
"""
|
||||
|
||||
* ^url = "https://fhir.dghs.gov.bd/core/StructureDefinition/icd11-cluster-expression"
|
||||
* ^status = #active
|
||||
* ^experimental = false
|
||||
* ^publisher = "Directorate General of Health Services (DGHS), MoHFW, Bangladesh"
|
||||
* ^contact.name = "DGHS Health Informatics Unit"
|
||||
* ^contact.telecom.system = #url
|
||||
* ^contact.telecom.value = "https://dghs.gov.bd"
|
||||
* ^jurisdiction = urn:iso:std:iso:3166#BD "Bangladesh"
|
||||
* ^context[+].type = #element
|
||||
* ^context[=].expression = "Coding"
|
||||
|
||||
* value[x] only string
|
||||
* valueString 1..1
|
||||
* valueString ^short = "ICD-11 postcoordinated cluster expression string"
|
||||
* valueString ^definition = """
|
||||
The full postcoordinated cluster expression, including the stem code and
|
||||
all satellite codes joined by & or / operators. Example:
|
||||
NC72.Z&XK8G&XJ7ZH&XJ7YM. The stem code in this string SHALL match
|
||||
Coding.code on the parent Coding element.
|
||||
"""
|
||||
@@ -1,39 +0,0 @@
|
||||
{
|
||||
"resourceType": "StructureDefinition",
|
||||
<<<<<<< HEAD
|
||||
"id": "bd-Immunization",
|
||||
"url": "http://example.org/StructureDefinition/bd-Immunization",
|
||||
"version": "1.0.0",
|
||||
"name": "BDImmunizationProfile",
|
||||
"title": "Immunization Profile for Bangladesh",
|
||||
"description": "Bangladesh Immunization Profile",
|
||||
=======
|
||||
"id": "bd-immunization",
|
||||
"url": "https://fhir.dghs.gov.bd/core/identifier/bd-immunization",
|
||||
"version": "1.0.0",
|
||||
"name": "BDImmunizationProfile",
|
||||
"title": "Patient Immunization Profile for Bangladesh",
|
||||
"description": "Patients Immunization Bangladesh Standard",
|
||||
>>>>>>> 1c45affa520e64b3b9efc307d9116ff138171fa5
|
||||
"fhirVersion": "4.0.1",
|
||||
"kind": "resource",
|
||||
"abstract": false,
|
||||
"type": "Immunization",
|
||||
"baseDefinition": "http://hl7.org/fhir/StructureDefinition/Immunization",
|
||||
"derivation": "constraint",
|
||||
"differential": {
|
||||
"element": [
|
||||
{
|
||||
"id": "Immunization.identifier",
|
||||
"path": "Immunization.identifier",
|
||||
<<<<<<< HEAD
|
||||
"short": "Unique identifier",
|
||||
=======
|
||||
"short": "Identifier",
|
||||
>>>>>>> 1c45affa520e64b3b9efc307d9116ff138171fa5
|
||||
"definition": "Unique identifier for the vaccination event",
|
||||
"min": 1
|
||||
}
|
||||
]
|
||||
}
|
||||
}
|
||||
63
input/fsh/namingSystems/ICD11MMSNamingSystem.fsh
Normal file
63
input/fsh/namingSystems/ICD11MMSNamingSystem.fsh
Normal file
@@ -0,0 +1,63 @@
|
||||
// ============================================================
|
||||
// ICD11MMSNamingSystem.fsh
|
||||
// NamingSystem for ICD-11 MMS in the Bangladesh national context
|
||||
// Canonical authority: WHO
|
||||
// National resolver: OCL at https://tr.ocl.dghs.gov.bd
|
||||
// ============================================================
|
||||
|
||||
Instance: icd11-mms-bd
|
||||
InstanceOf: NamingSystem
|
||||
Usage: #definition
|
||||
Title: "ICD-11 MMS NamingSystem — Bangladesh"
|
||||
Description: """
|
||||
Declares the ICD-11 Mortality and Morbidity Statistics (MMS) coding system
|
||||
as a known and supported terminology within the Bangladesh national health
|
||||
information infrastructure.
|
||||
|
||||
Canonical system URI: http://id.who.int/icd/release/11/mms
|
||||
Canonical authority: World Health Organization (WHO)
|
||||
|
||||
Preferred code form: short stem codes (e.g. 1A00, NC72.Z).
|
||||
Linearization URIs are not used as code identifiers in this IG.
|
||||
|
||||
National terminology resolver (OCL):
|
||||
https://tr.ocl.dghs.gov.bd
|
||||
|
||||
Supported OCL operations (use `system=` parameter, not `url=`):
|
||||
- $validate-code: https://tr.ocl.dghs.gov.bd/api/fhir/CodeSystem/$validate-code
|
||||
?system=http://id.who.int/icd/release/11/mms&code={code}
|
||||
- $lookup: https://tr.ocl.dghs.gov.bd/api/fhir/CodeSystem/$lookup
|
||||
?system=http://id.who.int/icd/release/11/mms&code={code}
|
||||
|
||||
$expand is not supported — known OCL limitation.
|
||||
|
||||
Version 2025-01 is active in the national OCL instance with 36,941
|
||||
imported concepts. The OCL resolver is an internal national service;
|
||||
vendors do not interact with it directly. All vendor submissions are
|
||||
validated at the HIE boundary via the Bangladesh ICD-11 Cluster Validator
|
||||
at https://icd11.dghs.gov.bd/cluster/validate.
|
||||
"""
|
||||
|
||||
* name = "ICD11MMSBangladesh"
|
||||
* status = #active
|
||||
* kind = #codesystem
|
||||
* date = "2025-01-01"
|
||||
* publisher = "Directorate General of Health Services (DGHS), MoHFW, Bangladesh"
|
||||
* contact.name = "DGHS Health Informatics Unit"
|
||||
* contact.telecom.system = #url
|
||||
* contact.telecom.value = "https://dghs.gov.bd"
|
||||
* jurisdiction = urn:iso:std:iso:3166#BD "Bangladesh"
|
||||
* responsible = "World Health Organization (WHO)"
|
||||
|
||||
// Primary identifier — canonical system URI (WHO authority)
|
||||
* uniqueId[+].type = #uri
|
||||
* uniqueId[=].value = "http://id.who.int/icd/release/11/mms"
|
||||
* uniqueId[=].preferred = true
|
||||
* uniqueId[=].comment = "Canonical ICD-11 MMS system URI. Canonical authority is WHO."
|
||||
* uniqueId[=].period.start = "2025-01-01"
|
||||
|
||||
// Secondary identifier — national OCL source locator (machine-discoverable, not canonical)
|
||||
* uniqueId[+].type = #uri
|
||||
* uniqueId[=].value = "https://tr.ocl.dghs.gov.bd/orgs/MoHFW/sources/ICD-11-MMS/"
|
||||
* uniqueId[=].preferred = false
|
||||
* uniqueId[=].comment = "National terminology resolver — Bangladesh OCL instance. Not the canonical system URI."
|
||||
65
input/fsh/profile/BDConditionProfile.fsh
Normal file
65
input/fsh/profile/BDConditionProfile.fsh
Normal file
@@ -0,0 +1,65 @@
|
||||
// ============================================================
|
||||
// BDConditionProfile.fsh
|
||||
// BD-Core Condition profile with mandatory ICD-11 MMS stem slice
|
||||
// Binding: Diagnosis and Finding class concepts only
|
||||
// Runtime enforcement via OCL ValueSet $validate-code
|
||||
// ============================================================
|
||||
|
||||
Profile: BDConditionProfile
|
||||
Parent: Condition
|
||||
Id: bd-condition
|
||||
Title: "BD Core Condition Profile (ICD-11)"
|
||||
Description: """
|
||||
Condition resource coded with ICD-11 MMS, restricted to Diagnosis and
|
||||
Finding class concepts. Defined in the Bangladesh Core FHIR Implementation
|
||||
Guide (BD-Core-FHIR-IG) published by DGHS/MoHFW.
|
||||
"""
|
||||
|
||||
* code 1..1 MS
|
||||
* code from bd-condition-icd11-diagnosis-valueset (preferred)
|
||||
* code ^comment = """
|
||||
Condition.code SHALL contain at least one coding conforming to the
|
||||
coding[stem] slice with system = http://id.who.int/icd/release/11/mms.
|
||||
|
||||
Stem code rules:
|
||||
- The stem code SHALL be a Diagnosis or Finding class ICD-11 MMS concept.
|
||||
- This restriction is enforced at runtime via OCL ValueSet $validate-code
|
||||
against the Bangladesh ICD-11 MMS Condition ValueSet.
|
||||
- Stem-only codes SHALL be validated via OCL $validate-code.
|
||||
- Substance, Organism, Device, Anatomy, and Misc class concepts SHALL NOT
|
||||
appear as standalone stem codes in Condition.code.
|
||||
|
||||
Cluster expression rules:
|
||||
- When a concept requires postcoordination, the full cluster expression
|
||||
SHALL be carried in the icd11-cluster-expression extension on coding[stem].
|
||||
- The icd11-cluster-expression extension SHALL only be present when the
|
||||
expression contains at least one satellite code joined by & or / operators.
|
||||
- Satellite codes in the cluster expression are exempt from the
|
||||
Diagnosis/Finding class restriction.
|
||||
- Cluster expressions SHALL be validated against the Bangladesh ICD-11
|
||||
Cluster Validator at https://icd11.dghs.gov.bd/cluster/validate
|
||||
prior to submission to the HIE.
|
||||
|
||||
Additional local codings are permitted alongside the mandatory ICD-11 stem
|
||||
(slicing is open). Cluster expressions are typically sourced from the WHO
|
||||
Electronic Coding Tool (ECT) at the point of care.
|
||||
"""
|
||||
|
||||
* code.coding ^slicing.discriminator.type = #value
|
||||
* code.coding ^slicing.discriminator.path = "system"
|
||||
* code.coding ^slicing.rules = #open
|
||||
* code.coding ^slicing.description = "Slice requiring exactly one ICD-11 MMS stem code. Additional local codings permitted."
|
||||
|
||||
* code.coding contains stem 1..1
|
||||
* code.coding[stem] ^short = "Mandatory ICD-11 MMS stem code"
|
||||
* code.coding[stem] ^definition = """
|
||||
Exactly one ICD-11 MMS stem code is required. The stem code SHALL be a
|
||||
Diagnosis or Finding class concept. When the condition requires
|
||||
postcoordination, the full cluster expression is carried in the
|
||||
icd11-cluster-expression extension on this coding element.
|
||||
"""
|
||||
* code.coding[stem].system 1..1
|
||||
* code.coding[stem].system = "http://id.who.int/icd/release/11/mms" (exactly)
|
||||
* code.coding[stem].code 1..1
|
||||
* code.coding[stem].extension contains
|
||||
https://fhir.dghs.gov.bd/core/StructureDefinition/icd11-cluster-expression named clusterExpression 0..1
|
||||
62
input/fsh/valueSets/BDConditionICD11DiagnosisVS.fsh
Normal file
62
input/fsh/valueSets/BDConditionICD11DiagnosisVS.fsh
Normal file
@@ -0,0 +1,62 @@
|
||||
// ============================================================
|
||||
// BDConditionICD11DiagnosisVS.fsh
|
||||
// ICD-11 MMS ValueSet restricted to Diagnosis and Finding classes
|
||||
// Binding target for Condition.code in BDConditionProfile
|
||||
// Empty stub — runtime enforcement via OCL $validate-code
|
||||
// $expand not available — suppressed in sushi-config.yaml
|
||||
// ============================================================
|
||||
|
||||
ValueSet: BDConditionICD11DiagnosisVS
|
||||
Id: bd-condition-icd11-diagnosis-valueset
|
||||
Title: "Bangladesh ICD-11 MMS Condition ValueSet (Diagnosis and Finding)"
|
||||
Description: """
|
||||
ICD-11 MMS concepts restricted to the Diagnosis (14,071) and Finding (5,590)
|
||||
concept classes, totalling 19,661 concepts as of version 2025-01.
|
||||
|
||||
This ValueSet is the binding target for Condition.code in the BD-Core
|
||||
Condition profile. Substance, Organism, Device, Anatomy, and Misc class
|
||||
concepts are excluded and SHALL NOT appear as standalone stem codes in
|
||||
Condition.code. This restriction applies to stem codes only — satellite
|
||||
codes carried in the icd11-cluster-expression extension are exempt.
|
||||
|
||||
This ValueSet is an empty stub. No compose block is declared because
|
||||
$expand is not supported by the national OCL terminology server and
|
||||
no machine-executable filter for concept_class is available at the
|
||||
IG layer. The compose would be nominal only and is omitted to avoid
|
||||
misrepresenting machine-executable semantics.
|
||||
|
||||
The ValueSet is hosted in OCL as a collection with 19,661 explicit
|
||||
concept references (Diagnosis and Finding classes only). Runtime
|
||||
enforcement is via OCL ValueSet $validate-code:
|
||||
|
||||
GET https://tr.ocl.dghs.gov.bd/api/fhir/ValueSet/$validate-code
|
||||
?url=https://fhir.dghs.gov.bd/core/ValueSet/bd-condition-icd11-diagnosis-valueset
|
||||
&system=http://id.who.int/icd/release/11/mms
|
||||
&code={code}
|
||||
|
||||
Confirmed behaviour:
|
||||
- Diagnosis class (e.g. 1A00): accepted
|
||||
- Finding class: accepted
|
||||
- Device class (e.g. XD7EB1): rejected
|
||||
- Substance class (e.g. XM6RB2): rejected
|
||||
|
||||
At the HAPI FHIR layer, enforcement is via RemoteTerminologyServiceValidationSupport
|
||||
configured to call OCL. HAPI FHIR deployment is a known gap to be closed
|
||||
before vendor onboarding.
|
||||
|
||||
VERSION UPGRADES:
|
||||
Upgrading to a new ICD-11 MMS release requires re-running
|
||||
populate_condition_valueset.py. Automated via version_upgrade.py.
|
||||
"""
|
||||
|
||||
* ^url = "https://fhir.dghs.gov.bd/core/ValueSet/bd-condition-icd11-diagnosis-valueset"
|
||||
* ^status = #active
|
||||
* ^experimental = false
|
||||
* ^version = "2025-01"
|
||||
* ^publisher = "Directorate General of Health Services (DGHS), MoHFW, Bangladesh"
|
||||
* ^contact.name = "DGHS Health Informatics Unit"
|
||||
* ^contact.telecom.system = #url
|
||||
* ^contact.telecom.value = "https://dghs.gov.bd"
|
||||
* ^jurisdiction = urn:iso:std:iso:3166#BD "Bangladesh"
|
||||
* ^copyright = "ICD-11 is copyright © World Health Organization. Used under licence."
|
||||
* ^immutable = false
|
||||
@@ -1,6 +0,0 @@
|
||||
ValueSet: BDConditionICD11VS
|
||||
Id: bd-condition-icd11-valueset
|
||||
Title: "Bangladesh ICD-11 MMS ValueSet"
|
||||
Description: "ValueSet that includes the ICD-11 MMS CodeSystem for Condition.code"
|
||||
* ^url = "https://fhir.dghs.gov.bd/core/ValueSet/bd-condition-icd11-valueset"
|
||||
* include codes from system http://id.who.int/icd/release/11/mms
|
||||
@@ -10,11 +10,27 @@
|
||||
"path": "https://fhir.dghs.gov.bd/core/",
|
||||
"status": "ci-build",
|
||||
"current": true
|
||||
},
|
||||
{
|
||||
"version": "0.2.5",
|
||||
"date": "2025-10-06",
|
||||
"desc": "Minor bug fix release",
|
||||
"path": "https://fhir.dghs.gov.bd/core/0.2.5/",
|
||||
"status": "trial-use",
|
||||
"sequence": "STU 1"
|
||||
},
|
||||
{
|
||||
"version": "0.2.4",
|
||||
"date": "2025-10-06",
|
||||
"desc": "Minor visual improvements",
|
||||
"path": "https://fhir.dghs.gov.bd/core/0.2.4/",
|
||||
"status": "trial-use",
|
||||
"sequence": "STU 1"
|
||||
},
|
||||
{
|
||||
"version": "0.2.3",
|
||||
"date": "2025-10-06",
|
||||
"desc": "Second draft release of the Bangladesh Core FHIR IG",
|
||||
"desc": "Minor documentation updates",
|
||||
"path": "https://fhir.dghs.gov.bd/core/0.2.3/",
|
||||
"status": "trial-use",
|
||||
"sequence": "STU 1"
|
||||
@@ -22,7 +38,7 @@
|
||||
{
|
||||
"version": "0.2.2",
|
||||
"date": "2025-10-06",
|
||||
"desc": "Second draft release of the Bangladesh Core FHIR IG",
|
||||
"desc": "Minor bug fix release",
|
||||
"path": "https://fhir.dghs.gov.bd/core/0.2.2/",
|
||||
"status": "trial-use",
|
||||
"sequence": "STU 1"
|
||||
|
||||
@@ -1,5 +1,135 @@
|
||||
### A Heading
|
||||
You can also use markdown if that's your thing
|
||||
## Bangladesh Core FHIR Implementation Guide — General Specification
|
||||
|
||||
And an icon: 
|
||||
### Purpose and Scope
|
||||
|
||||
This Implementation Guide (IG) defines the national FHIR R4 core profiles,
|
||||
value sets, code systems, extensions, and implementation rules for digital
|
||||
health systems in Bangladesh. It is published by the Directorate General of
|
||||
Health Services (DGHS), Ministry of Health and Family Welfare (MoHFW).
|
||||
|
||||
This IG is a foundational component of the **Shareable Health Record (SHR)**
|
||||
system — the national Health Information Exchange (HIE) and gateway for
|
||||
producing a Personal Health Profile for every citizen of Bangladesh.
|
||||
|
||||
This IG is aligned with and gives technical expression to:
|
||||
- **Bangladesh Digital Health Strategy 2023–2027**
|
||||
- **Bangladesh Digital Health Architecture Blueprint**
|
||||
|
||||
The Patient profile strictly conforms to the **Citizen Core Data Structure
|
||||
(CCDS)** defined by the Cabinet Division of the Government of Bangladesh.
|
||||
|
||||
---
|
||||
|
||||
### Intended Audience
|
||||
|
||||
This IG is addressed to all software systems exchanging health data with
|
||||
the national SHR, including but not limited to:
|
||||
|
||||
- Electronic Medical Record (EMR) systems
|
||||
- Laboratory Information Systems (LIS)
|
||||
- Picture Archiving and Communication Systems (PACS)
|
||||
- Hospital Information Systems (HIS)
|
||||
|
||||
This includes systems operated by public sector facilities, private
|
||||
hospitals and clinics, autonomous bodies, and non-governmental
|
||||
organisations (NGOs) operating within Bangladesh.
|
||||
|
||||
---
|
||||
|
||||
### FHIR Version and Conventions
|
||||
|
||||
This IG is built on **FHIR R4 (4.0.1)**. All profiles, extensions, value
|
||||
sets, and code systems defined here conform to the FHIR R4 specification.
|
||||
|
||||
Conformance language in this IG follows **RFC 2119**: SHALL, SHALL NOT,
|
||||
SHOULD, SHOULD NOT, and MAY carry their standard normative meanings.
|
||||
|
||||
---
|
||||
|
||||
### Design Principles
|
||||
|
||||
**1. National terminology over international defaults**
|
||||
Where international code systems are used (ICD-11, LOINC, SNOMED CT),
|
||||
they are bound through national infrastructure. The national OpenConceptLab
|
||||
(OCL) terminology server at `https://tr.ocl.dghs.gov.bd` is the single
|
||||
public-facing terminology resolution point. Vendors never interact with
|
||||
upstream terminology sources directly.
|
||||
|
||||
**2. HIE boundary enforcement**
|
||||
All vendor submissions pass through the national SHR HIE boundary. Mandatory
|
||||
validation gates — including the Bangladesh ICD-11 Cluster Validator — are
|
||||
applied at the HIE layer. Profile conformance is a necessary but not
|
||||
sufficient condition for acceptance; HIE boundary rules apply additionally.
|
||||
|
||||
**3. Open slicing for extensibility**
|
||||
Where slices are defined on coding elements, slicing is open (`#open`).
|
||||
Mandatory slices enforce the presence of nationally required codes;
|
||||
additional local or proprietary codings are permitted alongside them.
|
||||
This ensures national interoperability without preventing systems from
|
||||
carrying additional coded data.
|
||||
|
||||
**4. Citizen-centred identity**
|
||||
The Patient profile conforms to the Citizen Core Data Structure (CCDS),
|
||||
ensuring that patient identity in the SHR is anchored to the national
|
||||
citizen identity infrastructure.
|
||||
|
||||
**5. Must Support obligations**
|
||||
Must Support (MS) in this IG means that conformant systems SHALL be capable
|
||||
of populating the element if the data is held by the system, and SHALL be
|
||||
capable of processing it when received. Specific sender and receiver
|
||||
obligations are \[TODO: to be defined in a future revision\].
|
||||
|
||||
---
|
||||
|
||||
### Profiles
|
||||
|
||||
The following national core profiles are defined in this IG:
|
||||
|
||||
| Profile | Base Resource | Purpose |
|
||||
|---|---|---|
|
||||
| [BD Patient](StructureDefinition-bd-patient.html) | Patient | Citizen identity conforming to CCDS |
|
||||
| [BD Condition](StructureDefinition-bd-condition.html) | Condition | Clinical conditions coded with ICD-11 MMS |
|
||||
| [BD Observation](StructureDefinition-bd-observation.html) | Observation | Vital signs, laboratory results, clinical findings |
|
||||
| [BD Encounter](StructureDefinition-bd-encounter.html) | Encounter | Clinical visits and episodes of care |
|
||||
| [BD Medication](StructureDefinition-bd-medication.html) | Medication | Medication definitions |
|
||||
| [BD MedicationRequest](StructureDefinition-bd-medicationrequest.html) | MedicationRequest | Prescriptions and medication orders |
|
||||
| [BD Immunization](StructureDefinition-bd-immunization.html) | Immunization | Vaccination records |
|
||||
| [BD Organization](StructureDefinition-bd-organization.html) | Organization | Health facilities and organisations |
|
||||
| [BD Practitioner](StructureDefinition-bd-practitioner.html) | Practitioner | Healthcare providers |
|
||||
| [BD Location](StructureDefinition-bd-location.html) | Location | Physical locations and administrative geography |
|
||||
|
||||
---
|
||||
|
||||
### Terminology
|
||||
|
||||
The following external code systems are used in this IG:
|
||||
|
||||
| System | URI | Purpose |
|
||||
|---|---|---|
|
||||
| ICD-11 MMS | `http://id.who.int/icd/release/11/mms` | Condition coding |
|
||||
| LOINC | `http://loinc.org` | Observation coding |
|
||||
| UCUM | `http://unitsofmeasure.org` | Observation units |
|
||||
| SNOMED CT | `http://snomed.info/sct` | Clinical terminology |
|
||||
|
||||
Runtime terminology resolution is provided by the national OCL terminology
|
||||
server. See the [ICD-11 Implementation](icd11.html) page for full details
|
||||
of ICD-11 integration, postcoordination conventions, and conformance
|
||||
requirements.
|
||||
|
||||
---
|
||||
|
||||
### Known Gaps and Planned Work
|
||||
|
||||
This IG is currently at version 0.2.5 with status `draft`. The following
|
||||
are known gaps to be addressed in future revisions:
|
||||
|
||||
- **Must Support semantics** — sender and receiver obligations not yet
|
||||
formally defined
|
||||
- **Capability Statements** — no CapabilityStatement resources defined yet
|
||||
- **Search Parameters** — no defined search parameter requirements yet
|
||||
- **Transaction Patterns** — no defined FHIR transaction or message patterns yet
|
||||
- **HAPI FHIR deployment** — `RemoteTerminologyServiceValidationSupport`
|
||||
configuration for OCL not yet deployed; this is a prerequisite for
|
||||
runtime ICD-11 class restriction enforcement before vendor onboarding
|
||||
- **Must Support definitions per profile** — individual profile pages do
|
||||
not yet carry explicit MS obligation tables
|
||||
|
||||
@@ -1,2 +1,244 @@
|
||||
### A Heading
|
||||
A child specification page with more detail
|
||||
## ICD-11 Implementation
|
||||
|
||||
### Overview
|
||||
|
||||
The Bangladesh Core FHIR Implementation Guide uses ICD-11 Mortality and
|
||||
Morbidity Statistics (MMS) as the mandatory coding system for clinical
|
||||
conditions. This page documents the system URI, terminology infrastructure,
|
||||
conformance requirements, and postcoordination conventions for implementers.
|
||||
|
||||
---
|
||||
|
||||
### System URI
|
||||
|
||||
All ICD-11 MMS codes SHALL use the WHO canonical system URI:
|
||||
```
|
||||
http://id.who.int/icd/release/11/mms
|
||||
```
|
||||
|
||||
The preferred code form is the short stem code (e.g. `1A00`, `NC72.Z`).
|
||||
Linearization URIs are not used as code identifiers in this IG.
|
||||
|
||||
---
|
||||
|
||||
### Terminology Infrastructure
|
||||
|
||||
#### National OCL Terminology Server
|
||||
|
||||
Runtime code validation and lookup are delegated to the national
|
||||
OpenConceptLab (OCL) terminology server operated by DGHS/MoHFW:
|
||||
|
||||
**Public FHIR R4 endpoint:** `https://tr.ocl.dghs.gov.bd`
|
||||
|
||||
OCL hosts ICD-11 MMS version 2025-01 with 36,941 concepts across the
|
||||
following concept classes: Diagnosis, Finding, Substance, Organism,
|
||||
Device, Anatomy, and Misc.
|
||||
|
||||
Vendors do not interact with OCL directly. All vendor submissions are
|
||||
validated at the HIE boundary via the Bangladesh ICD-11 Cluster Validator
|
||||
(see [Cluster Expressions](#cluster-expressions) below).
|
||||
|
||||
#### Supported OCL Operations
|
||||
|
||||
The following FHIR terminology operations are supported. The `system=`
|
||||
parameter must be used — `url=` is not supported by OCL.
|
||||
|
||||
**CodeSystem $validate-code**
|
||||
```
|
||||
GET https://tr.ocl.dghs.gov.bd/api/fhir/CodeSystem/$validate-code
|
||||
?system=http://id.who.int/icd/release/11/mms&code={code}
|
||||
```
|
||||
|
||||
**CodeSystem $lookup**
|
||||
```
|
||||
GET https://tr.ocl.dghs.gov.bd/api/fhir/CodeSystem/$lookup
|
||||
?system=http://id.who.int/icd/release/11/mms&code={code}
|
||||
```
|
||||
|
||||
**ValueSet $validate-code**
|
||||
```
|
||||
GET https://tr.ocl.dghs.gov.bd/api/fhir/ValueSet/$validate-code
|
||||
?url=https://fhir.dghs.gov.bd/core/ValueSet/bd-condition-icd11-diagnosis-valueset
|
||||
&system=http://id.who.int/icd/release/11/mms&code={code}
|
||||
```
|
||||
|
||||
#### Unsupported OCL Operations
|
||||
|
||||
`$expand` is not supported — this is a known limitation of the national
|
||||
OCL instance. Build-time expansion is suppressed. Implementers SHALL NOT
|
||||
depend on `$expand` for ICD-11 ValueSets in this IG.
|
||||
|
||||
#### Local ICD-11 Docker Instance
|
||||
|
||||
A local WHO ICD-11 Docker instance is maintained internally by DGHS at
|
||||
`https://icd11.dghs.gov.bd` running release 2025-01. This instance is
|
||||
internal only and is not exposed to vendors. It serves as the import
|
||||
source for OCL and as the backend for the cluster validator.
|
||||
|
||||
---
|
||||
|
||||
### Condition.code Binding and Class Restriction
|
||||
|
||||
`Condition.code` is bound to the
|
||||
[Bangladesh ICD-11 MMS Condition ValueSet](ValueSet-bd-condition-icd11-diagnosis-valueset.html)
|
||||
at `preferred` strength. This ValueSet includes only Diagnosis (14,071)
|
||||
and Finding (5,590) class concepts — 19,661 concepts total as of
|
||||
version 2025-01.
|
||||
|
||||
`Condition.code` SHALL contain at least one coding conforming to the
|
||||
`coding[stem]` slice with `system = http://id.who.int/icd/release/11/mms`.
|
||||
Vendors cannot omit ICD-11 by substituting a local code.
|
||||
|
||||
The following concept classes SHALL NOT appear as standalone stem codes
|
||||
in `Condition.code`: Substance, Organism, Device, Anatomy, Misc.
|
||||
|
||||
This restriction exists because these classes represent entities that
|
||||
are not themselves diagnoses or clinical findings — they are axes used
|
||||
in postcoordination (e.g. a causative substance, an affected anatomy
|
||||
site). Their correct use is as satellite codes within a cluster
|
||||
expression, not as standalone condition codes.
|
||||
|
||||
Class restriction is enforced at runtime via OCL ValueSet `$validate-code`
|
||||
against the Bangladesh ICD-11 MMS Condition ValueSet. At the HAPI FHIR
|
||||
layer, enforcement is via `RemoteTerminologyServiceValidationSupport`
|
||||
configured to call OCL. HAPI FHIR deployment will be completed before
|
||||
vendor onboarding.
|
||||
|
||||
The `coding[stem]` slice is open (`#open`) — additional local codings
|
||||
are permitted alongside the mandatory ICD-11 stem.
|
||||
|
||||
---
|
||||
|
||||
### Cluster Expressions
|
||||
|
||||
#### Background
|
||||
|
||||
ICD-11 supports postcoordination — the combination of a stem code with
|
||||
one or more satellite codes to precisely represent a clinical concept
|
||||
that cannot be expressed by a stem code alone. A postcoordinated
|
||||
expression is called a cluster expression.
|
||||
|
||||
Cluster expressions are typically sourced from the WHO Electronic Coding
|
||||
Tool (ECT) at the point of care.
|
||||
|
||||
#### Syntax
|
||||
|
||||
A cluster expression combines a stem code with satellite codes using
|
||||
the `&` operator (combination) or `/` operator (specificity):
|
||||
```
|
||||
NC72.Z&XK8G&XJ7ZH&XJ7YM
|
||||
```
|
||||
|
||||
Where:
|
||||
- `NC72.Z` — stem code: Fracture of femur, unspecified
|
||||
- `XK8G` — satellite: laterality
|
||||
- `XJ7ZH` — satellite: fracture subtype
|
||||
- `XJ7YM` — satellite: fracture open or closed
|
||||
|
||||
#### FHIR Representation
|
||||
|
||||
The stem code is carried in `Coding.code`. The full cluster expression
|
||||
is carried in the
|
||||
[ICD-11 Cluster Expression extension](StructureDefinition-icd11-cluster-expression.html)
|
||||
on the same `Coding` element:
|
||||
```json
|
||||
"code": {
|
||||
"coding": [
|
||||
{
|
||||
"system": "http://id.who.int/icd/release/11/mms",
|
||||
"code": "NC72.Z",
|
||||
"display": "Fracture of femur, unspecified",
|
||||
"extension": [
|
||||
{
|
||||
"url": "https://fhir.dghs.gov.bd/core/StructureDefinition/icd11-cluster-expression",
|
||||
"valueString": "NC72.Z&XK8G&XJ7ZH&XJ7YM"
|
||||
}
|
||||
]
|
||||
}
|
||||
],
|
||||
"text": "Fracture of femur, unspecified — left, transverse, closed"
|
||||
}
|
||||
```
|
||||
|
||||
The stem code in `Coding.code` SHALL match the leading stem code in the
|
||||
cluster expression string.
|
||||
|
||||
#### Stem-Only vs Cluster
|
||||
|
||||
| Scenario | Representation | Validation |
|
||||
|---|---|---|
|
||||
| Single stem code | `Coding.code` only | OCL `$validate-code` |
|
||||
| Postcoordinated expression | `Coding.code` + cluster extension | Cluster Validator |
|
||||
|
||||
The cluster validator explicitly rejects stem-only expressions. Single
|
||||
stem codes SHALL be represented in `Coding.code` only and validated via
|
||||
OCL `$validate-code`.
|
||||
|
||||
#### Satellite Code Class Restriction Exemption
|
||||
|
||||
Satellite codes in a cluster expression are exempt from the
|
||||
Diagnosis/Finding class restriction that applies to stem codes in
|
||||
`Condition.code`. Substance, Anatomy, Organism, and other axis codes
|
||||
are valid and expected as satellites.
|
||||
|
||||
#### Bangladesh ICD-11 Cluster Validator
|
||||
|
||||
All postcoordinated cluster expressions SHALL be validated against the
|
||||
Bangladesh ICD-11 Cluster Validator prior to submission to the HIE:
|
||||
```
|
||||
POST https://icd11.dghs.gov.bd/cluster/validate
|
||||
Content-Type: application/json
|
||||
|
||||
{"expression": "NC72.Z&XK8G&XJ7ZH&XJ7YM"}
|
||||
```
|
||||
|
||||
Example response:
|
||||
```json
|
||||
{
|
||||
"valid": true,
|
||||
"stem": {
|
||||
"code": "NC72.Z",
|
||||
"display": "Fracture of femur, unspecified",
|
||||
"ocl_validated": true
|
||||
},
|
||||
"satellites": [
|
||||
{"code": "XK8G", "axis": "laterality", "valid": true},
|
||||
{"code": "XJ7ZH", "axis": "fractureSubtype", "valid": true},
|
||||
{"code": "XJ7YM", "axis": "fractureOpenOrClosed", "valid": true}
|
||||
],
|
||||
"errors": []
|
||||
}
|
||||
```
|
||||
|
||||
The cluster validator is a mandatory HIE boundary gate. All vendor
|
||||
submissions containing postcoordinated ICD-11 expressions pass through it.
|
||||
|
||||
---
|
||||
|
||||
### Conformance Statements
|
||||
|
||||
**ICD-11-CONF-01:** ICD-11 MMS codes SHALL use system URI
|
||||
`http://id.who.int/icd/release/11/mms`. Stem code validation is available
|
||||
via OCL at:
|
||||
`https://tr.ocl.dghs.gov.bd/api/fhir/CodeSystem/$validate-code?system=http://id.who.int/icd/release/11/mms&code={code}`
|
||||
|
||||
**ICD-11-CONF-02:** The `icd11-cluster-expression` extension SHALL only
|
||||
be present when the expression contains at least one postcoordination
|
||||
satellite code using `&` or `/` operators. Single stem codes SHALL be
|
||||
represented in `Coding.code` only and validated via OCL `$validate-code`.
|
||||
|
||||
**ICD-11-CONF-03:** Postcoordinated cluster expressions SHALL be validated
|
||||
against the Bangladesh ICD-11 Cluster Validator at
|
||||
`https://icd11.dghs.gov.bd/cluster/validate` prior to submission to the HIE.
|
||||
|
||||
**ICD-11-CONF-04:** `Condition.code` SHALL contain at least one coding
|
||||
conforming to the `coding[stem]` slice with
|
||||
`system = http://id.who.int/icd/release/11/mms`. The stem code SHALL be
|
||||
a member of the Bangladesh ICD-11 MMS Condition ValueSet, which includes
|
||||
only Diagnosis and Finding class concepts. This restriction is enforced
|
||||
at runtime via OCL ValueSet `$validate-code`.
|
||||
|
||||
**ICD-11-CONF-05:** Substance, Organism, Device, Anatomy, and Misc class
|
||||
ICD-11 concepts SHALL NOT appear as standalone stem codes in
|
||||
`Condition.code`. This restriction does not apply to satellite codes
|
||||
carried in the `icd11-cluster-expression` extension.
|
||||
@@ -1,33 +0,0 @@
|
||||
<?xml version="1.0" encoding="UTF-8"?>
|
||||
<feed xmlns="http://www.w3.org/2005/Atom">
|
||||
<id>https://fhir.dghs.gov.bd/core/package-feed.xml</id>
|
||||
<title>Bangladesh Core FHIR IG Package Feed</title>
|
||||
<subtitle>FHIR Package Feed for bd.fhir.core</subtitle>
|
||||
<link rel="self" href="https://fhir.dghs.gov.bd/core/package-feed.xml"/>
|
||||
<link rel="alternate" href="https://fhir.dghs.gov.bd/core/"/>
|
||||
<updated>2025-10-02T00:00:00Z</updated>
|
||||
<author>
|
||||
<name>MIS, Directorate General of Health Services (DGHS), Bangladesh</name>
|
||||
<uri>https://dghs.gov.bd</uri>
|
||||
</author>
|
||||
|
||||
<!-- Entries will be automatically added by the CI/CD pipeline -->
|
||||
<!-- Example entry structure (will be generated): -->
|
||||
<!--
|
||||
<entry>
|
||||
<title>bd.fhir.core version 0.2.0</title>
|
||||
<link rel="alternate" href="https://fhir.dghs.gov.bd/core/0.2.0/"/>
|
||||
<id>https://fhir.dghs.gov.bd/core/0.2.0/</id>
|
||||
<updated>2025-10-02T00:00:00Z</updated>
|
||||
<summary>Release 0.2.0 of Bangladesh Core FHIR Implementation Guide</summary>
|
||||
</entry>
|
||||
-->
|
||||
|
||||
<entry>
|
||||
<title>bd.fhir.core version 0.2.0</title>
|
||||
<link rel="alternate" href="https://fhir.dghs.gov.bd/core/0.2.0/"/>
|
||||
<id>https://fhir.dghs.gov.bd/core/0.2.0/</id>
|
||||
<updated>2025-10-02T00:00:00Z</updated>
|
||||
<summary>First draft release of Bangladesh Core FHIR Implementation Guide</summary>
|
||||
</entry>
|
||||
</feed>
|
||||
@@ -1,23 +0,0 @@
|
||||
{
|
||||
"package-id": "bd.fhir.core",
|
||||
"title": "Bangladesh Core FHIR Implementation Guide",
|
||||
"canonical": "https://fhir.dghs.gov.bd",
|
||||
"introduction": "The Bangladesh Core FHIR IG defines national base profiles, value sets, and extensions for health data interoperability.",
|
||||
"list": [
|
||||
{
|
||||
"version": "current",
|
||||
"desc": "Continuous Integration Build (latest development version)",
|
||||
"path": "https://fhir.dghs.gov.bd/build",
|
||||
"status": "ci-build",
|
||||
"current": true
|
||||
},
|
||||
{
|
||||
"version": "v0.2.0",
|
||||
"date": "2025-10-02",
|
||||
"desc": "First draft release of the Bangladesh Core FHIR IG.",
|
||||
"path": "https://fhir.dghs.gov.bd/v0.2.0",
|
||||
"status": "trial-use",
|
||||
"sequence": "STU 1"
|
||||
}
|
||||
]
|
||||
}
|
||||
@@ -10,11 +10,27 @@
|
||||
"path": "https://fhir.dghs.gov.bd/core/",
|
||||
"status": "ci-build",
|
||||
"current": true
|
||||
},
|
||||
{
|
||||
"version": "0.2.5",
|
||||
"date": "2025-10-06",
|
||||
"desc": "Minor bug fix release",
|
||||
"path": "https://fhir.dghs.gov.bd/core/0.2.5/",
|
||||
"status": "trial-use",
|
||||
"sequence": "STU 1"
|
||||
},
|
||||
{
|
||||
"version": "0.2.4",
|
||||
"date": "2025-10-06",
|
||||
"desc": "Minor visual improvements",
|
||||
"path": "https://fhir.dghs.gov.bd/core/0.2.4/",
|
||||
"status": "trial-use",
|
||||
"sequence": "STU 1"
|
||||
},
|
||||
{
|
||||
"version": "0.2.3",
|
||||
"date": "2025-10-06",
|
||||
"desc": "Second draft release of the Bangladesh Core FHIR IG",
|
||||
"desc": "Minor documentation updates",
|
||||
"path": "https://fhir.dghs.gov.bd/core/0.2.3/",
|
||||
"status": "trial-use",
|
||||
"sequence": "STU 1"
|
||||
@@ -22,7 +38,7 @@
|
||||
{
|
||||
"version": "0.2.2",
|
||||
"date": "2025-10-06",
|
||||
"desc": "Second draft release of the Bangladesh Core FHIR IG",
|
||||
"desc": "Minor bug fix release",
|
||||
"path": "https://fhir.dghs.gov.bd/core/0.2.2/",
|
||||
"status": "trial-use",
|
||||
"sequence": "STU 1"
|
||||
|
||||
@@ -1,12 +0,0 @@
|
||||
{
|
||||
"package-id": "bd.fhir.core",
|
||||
"title": "Bangladesh Core FHIR Implementation Guide",
|
||||
"canonical": "https://fhir.dghs.gov.bd",
|
||||
"version": "0.2.0",
|
||||
"path": "https://fhir.dghs.gov.bd",
|
||||
"status": "trial-use",
|
||||
"sequence": "STU 1",
|
||||
"mode": "milestone",
|
||||
"desc": "First draft release of the Bangladesh Core FHIR IG.",
|
||||
"first": true
|
||||
}
|
||||
@@ -6,7 +6,7 @@ description: >
|
||||
This Implementation Guide defines the Bangladesh Core FHIR profiles,
|
||||
value sets, code systems, and implementation rules for national digital health systems.
|
||||
status: draft
|
||||
version: 0.2.4
|
||||
version: 0.3.0
|
||||
fhirVersion: 4.0.1
|
||||
copyrightYear: 2025+
|
||||
releaseLabel: CI Build
|
||||
|
||||
Reference in New Issue
Block a user