# coding=utf-8
# Copyright 2024 the HuggingFace Inc. team. All rights reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
#     http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
import argparse
import glob
import importlib
import os
import re
from abc import ABC, abstractmethod
from collections import Counter, defaultdict, deque
from typing import Optional, Union

import libcst as cst
from check_copies import run_ruff
from create_dependency_mapping import find_priority_list
from libcst import ClassDef, CSTVisitor
from libcst import matchers as m
from libcst.metadata import MetadataWrapper, ParentNodeProvider, PositionProvider, ScopeProvider

from transformers import logging
from transformers.models.auto.configuration_auto import CONFIG_MAPPING_NAMES


logger = logging.get_logger(__name__)


AUTO_GENERATED_MESSAGE = """#                🚨🚨🚨🚨🚨🚨🚨🚨🚨🚨🚨🚨🚨🚨🚨🚨🚨🚨🚨🚨🚨🚨🚨🚨🚨🚨🚨🚨🚨🚨🚨🚨🚨🚨🚨🚨🚨🚨🚨🚨🚨🚨🚨🚨🚨🚨🚨🚨
#           This file was automatically generated from {relative_path}.
#               Do NOT edit this file manually as any edits will be overwritten by the generation of
#             the file from the modular. If any change should be done, please apply the change to the
#                          {short_name} file directly. One of our CI enforces this.
#                🚨🚨🚨🚨🚨🚨🚨🚨🚨🚨🚨🚨🚨🚨🚨🚨🚨🚨🚨🚨🚨🚨🚨🚨🚨🚨🚨🚨🚨🚨🚨🚨🚨🚨🚨🚨🚨🚨🚨🚨🚨🚨🚨🚨🚨🚨🚨🚨
"""


def get_module_source_from_name(module_name: str) -> str:
    # Extract the source code from the module name
    spec = importlib.util.find_spec(module_name)
    if spec is None or spec.origin is None:
        raise ValueError(f"Cannot open file associated with {module_name} module.")

    with open(spec.origin, "r", encoding="utf-8") as file:
        source_code = file.read()
    return source_code


def preserve_case_replace(text, patterns: dict, default_name: str):
    # Create a regex pattern to match all variations
    regex_pattern = "|".join(re.escape(key) for key in patterns.keys())
    compiled_regex = re.compile(f"(?<![a-z0-9])({regex_pattern})(.|$)", re.IGNORECASE | re.DOTALL)

    def replace(match):
        matched_pattern = match.group(1)
        next_char = match.group(2)
        new_pattern = patterns.get(matched_pattern, default_name)

        # In this case, the cased old model did not respect CamelCase and was all UPPERCASE, so we need to rely on next char
        # The heuristic is: if next char is not a letter, then it is not part of a model name and result should be `new_name`.upper()
        if len(patterns) == 2 and matched_pattern.isupper():
            if not next_char.isalpha():
                # `new_name.upper()` is just the other entry for `matched_pattern.lower()`, uppercased
                new_pattern = patterns[matched_pattern.lower()].upper()

        return new_pattern + next_char

    return compiled_regex.sub(replace, text)


def get_cased_name(lowercase_name: str) -> str:
    """From a model name in lowercase in the format `my_model`, return the cased name in the format `MyModel`."""
    alt_lowercase_name = lowercase_name.replace("_", "-")
    if lowercase_name in CONFIG_MAPPING_NAMES:
        return CONFIG_MAPPING_NAMES[lowercase_name].replace("Config", "")
    elif alt_lowercase_name in CONFIG_MAPPING_NAMES:
        return CONFIG_MAPPING_NAMES[alt_lowercase_name].replace("Config", "")
    else:
        return "".join(x.title() for x in lowercase_name.split("_"))


def get_lowercase_name(cased_name: str) -> str:
    """From a model name in Camelcase in the format `MyModel`, return the lowercase name in the format `my_model`."""
    inverse_mapping = {value: key for key, value in CONFIG_MAPPING_NAMES.items()}
    if cased_name + "Config" in inverse_mapping:
        return inverse_mapping[cased_name + "Config"]
    else:
        return "_".join([s.lower() for s in re.findall(r"[A-Z][^A-Z]*", cased_name)])


class ReplaceNameTransformer(m.MatcherDecoratableTransformer):
    """A transformer that replaces `old_name` with `new_name` in comments, string and any references.
    It should take into account name like `MyNewModel`, or `my_new_model`. Without using the AUTO_MAPPING.
    Supported renaming patterns:
        - llama -> my_new_model     and     my_new_model    -> llama
        - Llama -> MyNewModel       and     MyNewModel      -> Llama
        - LLAMA -> MY_NEW_MODEL     and     MY_NEW_MODEL    -> LLAMA
        - LLaMa -> MyNewModel       abd     MyNewModel      -> Llama
    """

    def __init__(self, old_name: str, new_name: str, original_new_model_name: str = "", only_doc: bool = False):
        super().__init__()
        old_name = old_name.replace("-", "_")
        new_name = new_name.replace("-", "_")
        self.old_name = old_name
        self.new_name = new_name
        self.cased_new_name = get_cased_name(self.new_name)
        self.cased_old_name = get_cased_name(self.old_name)
        self.patterns = {
            old_name: new_name,
            old_name.upper(): new_name.upper(),
            # For some old models, `self.cased_old_name` == `old_name.upper()` in which case this overwrite previous entry
            self.cased_old_name: self.cased_new_name,
        }
        # In case new_name is a prefix alias, and not the original new model name
        self.original_new_model_name = original_new_model_name
        self.only_doc = only_doc

    def _replace_name(self, original_node, updated_node):
        if re.findall(r"# Copied from", updated_node.value):
            return cst.RemoveFromParent()
        update = preserve_case_replace(updated_node.value, self.patterns, self.cased_new_name)
        return updated_node.with_changes(value=update)

    @m.leave(m.SimpleString() | m.Comment())
    def replace_name(self, original_node, updated_node):
        return self._replace_name(original_node, updated_node)

    def leave_Name(self, original_node, updated_node):
        if not self.only_doc:
            return self._replace_name(original_node, updated_node)
        return updated_node

    def leave_ImportFrom(self, original_node, updated_node):
        """The imports from other file types (configuration, processing etc) should use original model name."""
        if self.original_new_model_name != self.new_name and m.matches(updated_node.module, m.Name()):
            patterns = "|".join(ALL_FILE_TYPES)
            regex = rf"({patterns})_{self.new_name}"
            new_source = re.sub(
                regex, lambda m: f"{m.group(1)}_{self.original_new_model_name}", updated_node.module.value
            )
            updated_node = updated_node.with_changes(module=updated_node.module.with_changes(value=new_source))
        return updated_node


DOCSTRING_NODE = m.SimpleStatementLine(
    body=[
        m.Expr(
            value=m.SimpleString(
                # match anything between """ """
                value=m.MatchIfTrue(lambda value: re.search(r"\"\"\"[\s\S]*\"\"\"", value) is not None)
            )
        )
    ]
)


def SUPER_CALL_NODE(func_name):
    return m.Call(func=m.Attribute(value=m.Call(func=m.Name("super")), attr=m.Name(func_name)))


def is_call_to_super(node, func_name):
    return m.matches(
        node, m.SimpleStatementLine(body=[m.Return(SUPER_CALL_NODE(func_name)) | m.Expr(SUPER_CALL_NODE(func_name))])
    )


def get_full_attribute_name(node: Union[cst.Attribute, cst.Name]) -> Optional[str]:
    """Get the full name of an Attribute or Name node (e.g. `"nn.Module"` for an Attribute representing it). If the
    successive value of an Attribute are not Name nodes, return `None`."""
    if m.matches(node, m.Name()):
        return node.value
    elif m.matches(node, m.Attribute()):
        if not m.matches(node.attr, m.Name()):
            return None
        name = node.attr.value
        new_node = node.value
        while m.matches(new_node, m.Attribute()):
            if not m.matches(new_node.attr, m.Name()):
                return None
            name = new_node.attr.value + "." + name
            new_node = new_node.value
        if not m.matches(new_node, m.Name()):
            return None
        return new_node.value + "." + name
    return None


# Transformer class to replace ClassB.call_to_method and ClassB().call_to_method with super().call_to_method
class ReplaceMethodCallTransformer(cst.CSTTransformer):
    def __init__(self, all_bases: set[str]):
        self.all_bases = all_bases

    def leave_Attribute(self, original_node: cst.Attribute, updated_node: cst.Attribute) -> cst.CSTNode:
        # Handle ClassB.call_to_method or module.classB.call_to_method
        if (
            m.matches(original_node.value, m.Name() | m.Attribute())
            and get_full_attribute_name(original_node.value) in self.all_bases
            and m.matches(original_node.attr, m.Name())
        ):
            # Replace with super().call_to_method
            return updated_node.with_changes(
                value=cst.Call(cst.Name("super")),
            )
        # Handle ClassB().call_to_method or module.ClassB().call_to_method
        elif (
            m.matches(original_node.value, m.Call())
            and m.matches(original_node.value.func, m.Name() | m.Attribute())
            and get_full_attribute_name(original_node.value.func) in self.all_bases
            and m.matches(original_node.attr, m.Name())
        ):
            # Replace with super().call_to_method
            return updated_node.with_changes(value=cst.Call(cst.Name("super")))
        return updated_node

    def leave_Call(self, original_node: cst.Call, updated_node: cst.Call) -> cst.CSTNode:
        # Check if the function being called is of the form ClassB().func_a or ClassB.func_a
        if m.matches(original_node.func, m.Attribute()) and (
            # Match ClassB().func_a(...) or module
            (
                m.matches(original_node.func.value, m.Call())
                and m.matches(original_node.func.value.func, m.Name() | m.Attribute())
                and get_full_attribute_name(original_node.func.value.func) in self.all_bases
            )
            or
            # Match ClassB.func_a(...)
            (
                m.matches(original_node.func.value, m.Name() | m.Attribute())
                and get_full_attribute_name(original_node.func.value) in self.all_bases
            )
        ):
            # Check if the first argument is 'self', and remove it
            if len(original_node.args) > 0 and m.matches(original_node.args[0].value, m.Name("self")):
                # Create the new argument list without 'self'
                new_args = updated_node.args[1:]
            else:
                new_args = updated_node.args

            return updated_node.with_changes(args=new_args)
        return updated_node


def get_docstring_indent(docstring):
    # Match the first line after the opening triple quotes
    match = re.search(r'(?:"""|\'\'\'|```)\n(\s+)', docstring)
    if match:
        # Return the indentation spaces captured
        return len(match.group(1))
    return 0


def is_full_docstring(original_docstring: str, new_docstring: str, original_level: int) -> bool:
    """Check if `new_docstring` is a full docstring, or if it is only part of a docstring that should then
    be merged with the existing old one.
    """
    # libcst returns the docstrinbgs with literal `r"""` quotes in front
    new_docstring = new_docstring.split('"""', 1)[1]
    # The docstring contains Args definition, so it is self-contained
    if re.search(r"\n\s*Args:\n", new_docstring):
        return True
    elif re.search(r"\n\s*Args:\n", original_docstring):
        return False
    # Check if the docstring contains args docstring (meaning it is self contained):
    param_pattern = re.compile(
        # |--- Group 1 ---|| Group 2 ||- Group 3 -||---------- Group 4 ----------|
        rf"^\s{{0,{original_level}}}(\w+)\s*\(\s*([^, \)]*)(\s*.*?)\s*\)\s*:\s*((?:(?!\n^\s{{0,{original_level}}}\w+\s*\().)*)",
        re.DOTALL | re.MULTILINE,
    )
    match_object = param_pattern.search(new_docstring)
    if match_object is not None:
        return True
    # If it contains Returns, but starts with text indented with an additional 4 spaces before, it is self-contained
    # (this is the scenario when using `@add_start_docstrings_to_model_forward`, but adding more args to docstring)
    match_object = re.search(r"\n([^\S\n]*)Returns:\n", new_docstring)
    if match_object is not None:
        full_indent = match_object.group(1)
        striped_doc = new_docstring.strip("\n")
        if striped_doc.startswith(full_indent + " " * 4) or striped_doc.startswith(full_indent + "\t"):
            return True
    return False


def merge_docstrings(original_docstring, updated_docstring):
    original_level = get_docstring_indent(original_docstring)
    if not is_full_docstring(original_docstring, updated_docstring, original_level):
        # Split the docstring at the example section, assuming `"""` is used to define the docstring
        parts = original_docstring.split("```")
        if "```" in updated_docstring and len(parts) > 1:
            updated_docstring = updated_docstring.lstrip('r"')
            new_parts = updated_docstring.split("```")
            if len(new_parts) != 3:
                raise ValueError("There should only be one example, and it should have opening and closing '```'")
            parts[1] = new_parts[1]
            updated_docstring = "".join(
                [
                    f"\n{original_level * ' '}```",
                    parts[1],
                    "```",
                    parts[2],
                ]
            )
            docstring_opening, original_start_docstring = parts[0].rstrip(" \n").split('"""')[:2]
            new_start_docstring = new_parts[0].rstrip(" \n")
            docstring_opening += '"""'
            if new_start_docstring.startswith(original_start_docstring):
                updated_docstring = new_start_docstring + "\n" + updated_docstring
            elif original_start_docstring.endswith(new_start_docstring):
                updated_docstring = original_start_docstring + "\n" + updated_docstring
            else:
                updated_docstring = original_start_docstring + "\n" + new_start_docstring + "\n" + updated_docstring
            updated_docstring = docstring_opening + updated_docstring
        elif updated_docstring not in original_docstring:
            # add tabulation if we are at the lowest level.
            if re.search(r"\n\s*.*\(.*\)\:\n\s*\w", updated_docstring):
                updated_docstring = updated_docstring.replace("\n    ", "\n        ")
            updated_docstring = original_docstring.rstrip('"') + "\n" + updated_docstring.lstrip('r"\n')
    return updated_docstring


class SuperTransformer(cst.CSTTransformer):
    METADATA_DEPENDENCIES = (ParentNodeProvider,)

    def __init__(self, python_module: cst.Module, original_methods, updated_methods, all_bases=None):
        self.python_module = python_module
        self.original_methods = original_methods
        self.updated_methods = updated_methods
        self.all_assign_target = {}
        self.deleted_targets = {}  # child node can delete some arguments
        self.all_bases = all_bases or []
        self.transformer = ReplaceMethodCallTransformer(set(self.all_bases))

    def update_body(self, existing_body, new_statements):
        """
        Helper method to update the body by removing duplicates before adding new statements.
        `existing_body` is the body of the original method, the parent class
        `new_statements` are the additional statements
        """
        deduplicated_new_body = []
        existing_nodes = set()
        for node in new_statements:
            if m.matches(node, m.SimpleStatementLine(body=[m.Assign()])):
                target = self.python_module.code_for_node(node.body[0].targets[0].target)
                self.all_assign_target[target] = node
            if m.matches(node, m.SimpleStatementLine(body=[m.Del()])):
                target = self.python_module.code_for_node(node.body[0].target)
                self.deleted_targets[target] = node

        for stmt in existing_body:
            if m.matches(stmt, m.SimpleStatementLine(body=[m.Assign()])):
                target = self.python_module.code_for_node(stmt.body[0].targets[0].target)
                if target in self.deleted_targets:
                    continue
                if target in self.all_assign_target:
                    stmt = self.all_assign_target[target]
            # Skip the docstring (will be added later on, at the beginning)
            elif m.matches(stmt, DOCSTRING_NODE):
                continue
            comment_less_code = re.sub(r"#.*", "", self.python_module.code_for_node(stmt)).strip()
            comment_less_code = re.sub(r"\ *\n", "\n", comment_less_code).strip()
            deduplicated_new_body.append(stmt)
            existing_nodes.add(comment_less_code)

        for node in new_statements:
            code = self.python_module.code_for_node(node)
            comment_less_code = re.sub(r"#.*", "", code).strip()
            comment_less_code = re.sub(r"\ *\n", "\n", comment_less_code).strip()
            if node not in deduplicated_new_body and comment_less_code not in existing_nodes:
                if not m.matches(node, m.SimpleStatementLine(body=[m.Del()])):
                    deduplicated_new_body.append(node)
                    existing_nodes.add(comment_less_code)

        deduplicated_new_body = self._fix_post_init_location(deduplicated_new_body)

        return deduplicated_new_body

    def _fix_post_init_location(self, new_body: list[cst.CSTNode]):
        """Fix the location of the `post_init()` in the new body, if we added statements after the call to
        `super()` (it needs to be the very last statement called)"""
        # Fix the post_init() that has to be last
        for i, node in enumerate(new_body):
            code = self.python_module.code_for_node(node)
            comment_less_code = re.sub(r"#.*", "", code).strip()
            comment_less_code = re.sub(r"\ *\n", "\n", comment_less_code).strip()
            if "self.post_init(" in comment_less_code and i < len(new_body) - 1:
                # Remove it and add it again at the end
                new_body.pop(i)
                new_body.append(node)
                break
        return new_body

    def _fix_init_location(self, new_body):
        """Fix the location of the `super().__init__()` in the new body, if we had new statements before it."""
        start_index = 0
        for i, node in enumerate(new_body):
            if m.matches(node, DOCSTRING_NODE) and i == start_index:
                start_index += 1
                continue
            code = self.python_module.code_for_node(node)
            comment_less_code = re.sub(r"#.*", "", code).strip()
            comment_less_code = re.sub(r"\ *\n", "\n", comment_less_code).strip()
            if "super().__init__" in comment_less_code and i > start_index:
                # Remove it and add it again at the top after the docstrings
                node = new_body.pop(i)
                new_body = new_body[:start_index] + [node] + new_body[start_index:]
                break
        return new_body

    def replace_super_calls(self, node: cst.IndentedBlock, func_name: str) -> cst.CSTNode:
        """Updates the body of the input `node`'s `func_name` function by replacing calls
        to super().func_name() with the source code of the parent class' `func_name`.
        It keeps everything that is defined before `super().func_name()`.
        """
        self.has_docstring = False
        parent_has_docstring = False
        if func_name in self.original_methods:
            parent_has_docstring = m.matches(self.original_methods[func_name].body.body[0], DOCSTRING_NODE)
        new_body = []
        has_super_call = False

        for i, expr in enumerate(node.body):
            if is_call_to_super(expr, func_name):
                has_super_call = True
                new_body.extend(self.update_body(self.original_methods[func_name].body.body, node.body[i + 1 :]))
                new_body = self._fix_init_location(new_body)
            else:
                expr = expr.visit(self.transformer)
            if m.matches(expr, DOCSTRING_NODE):
                self.has_docstring = True
                if parent_has_docstring:  # actually here we ought to de-duplicate?
                    original_docstring = self.original_methods[func_name].body.body[0].body[0].value.value
                    updated_docstring = expr.body[0].value.value
                    merged_doc = merge_docstrings(original_docstring, updated_docstring)
                    new_node = [expr.with_changes(body=[cst.Expr(value=cst.SimpleString(value=merged_doc))])]
                else:
                    new_node = [expr]
                new_body.extend(new_node)
            elif not m.matches(expr, m.SimpleStatementLine(body=[m.Del()])) and not has_super_call:
                new_body.append(expr)
        if not self.has_docstring and parent_has_docstring:
            new_body = [self.original_methods[func_name].body.body[0]] + new_body
        return node.with_changes(body=new_body)

    def leave_FunctionDef(self, original_node: cst.Call, updated_node: cst.Call) -> cst.CSTNode:
        if updated_node.name.value in self.updated_methods:
            name = updated_node.name.value
            new_body = self.replace_super_calls(updated_node.body, name)
            return updated_node.with_changes(body=new_body, params=updated_node.params)
        return updated_node

    def leave_Return(self, original_node: cst.Return, updated_node: cst.Return) -> cst.CSTNode:
        """ "When a return statement is reached, it is replaced with the unrolled super code"""
        if m.matches(updated_node.value, m.Call(func=m.Attribute(attr=m.Name("super")))):
            func_def = self.get_metadata(ParentNodeProvider, original_node)
            if m.matched(func_def, m.FunctionDef()) and func_def.name.value in self.original_methods:
                updated_return_value = updated_node.value.with_changes(
                    args=[
                        cst.Arg(
                            value=cst.Call(func=cst.Name("super"), args=[cst.Arg(value=cst.Name(func_def.name.value))])
                        )
                    ]
                )
                return updated_node.with_changes(value=updated_return_value)
        return updated_node


def find_all_dependencies(
    dependency_mapping: dict[str, set],
    start_entity: Optional[str] = None,
    initial_dependencies: Optional[set] = None,
    initial_checked_dependencies: Optional[set] = None,
    return_parent: bool = False,
) -> Union[list, set]:
    """Return all the dependencies of the given `start_entity` or `initial_dependencies`. This is basically some kind of
    BFS traversal algorithm. It can either start from `start_entity`, or `initial_dependencies`.

    Args:
        dependency_mapping (`Dict[str, set]`):
            A mapping from entities (usually function/assignment names), to immediate dependencies. That is, for function names,
            a mapping {"foo": {"bar", "test"}} would indicate that functions `bar` and `test` are immediately called
            in `foo`'s definition.
        start_entity (str | None, *optional*):
            A key of `dependency_mapping`, indicating from which entity to start the search.
        initial_dependencies (set | None, *optional*):
            If `start_entity` is not provided, this can be used as an alternative. In this case, the search will continue
            from all the entities in `initial_dependencies`, if they are in `dependency_mapping`.
        initial_checked_dependencies (set | None, *optional*):
            If provided, entities already present in `initial_checked_dependencies` will not be part of the returned dependencies.
        return_parent (bool, *optional*):
            If `True`, will return a list consisting of tuples (dependency, parent) instead of a simple set of dependencies. Note
            that the order of the items in the list reflects the traversal order. Thus, no parent can ever appear before childs.
    Returns:
        A set of all the dependencies, or a list of tuples `(dependency, parent)` if `return_parent=True`.

    Example:
    Given the following structure in the `modular_xxx.py` file:
    ```
    def foo1():
        pass

    def foo2():
        pass

    def bar():
        foo1()

    def foobar():
        bar()
        foo2()

    class MyLayer(SomeOtherModelLayer):
        def forward(...):
            foobar()
    ```
    and the `dependency_mapping` created when visiting the `modular_xxx.py` file, we get:
    ```
    dependency_mapping = {'bar': {'foo1'}, 'foobar': {'bar', 'foo2'}}
    find_all_dependencies(dependency_mapping, start_entity='foobar', return_parent=True)
    >>> [('bar', 'foobar'), ('foo2', 'foobar'), ('foo1', 'bar')]
    ```
    That is, all the functions needed (and potentially their immediate parent) so that the function to be added
    in MyLayer (`foobar`) can work correctly.
    """
    if initial_dependencies is None and start_entity is not None:
        initial_dependencies = dependency_mapping[start_entity]
    if initial_checked_dependencies is None:
        initial_checked_dependencies = set()

    dependency_queue = deque(initial_dependencies)
    all_dependencies = set()
    all_dependencies_with_parent = []
    checked_dependencies = set(initial_checked_dependencies)
    parents = dict.fromkeys(initial_dependencies, start_entity)
    while len(dependency_queue) > 0:
        # Pick element to visit
        current = dependency_queue.popleft()
        if current not in checked_dependencies:
            # Add the dependencies
            all_dependencies.add(current)
            all_dependencies_with_parent += [(current, parents[current])]
            if current in dependency_mapping.keys():
                # Update dependency queue
                dependency_queue.extend(dependency_mapping[current])
                parents.update(dict.fromkeys(dependency_mapping[current], current))
            # add visited node to the list
            checked_dependencies.add(current)

    if not return_parent:
        return all_dependencies
    # no child can ever appear before its parent thanks to the queue (needed to add them at the correct location in the body later)
    return all_dependencies_with_parent


# Top-level variables that match the following patterns will always use the value in the `modular_xxx.py` file
ASSIGNMENTS_REGEX_TO_KEEP = [r"_CHECKPOINT", r"_EXPECTED", r"_FOR_DOC", r"_HIDDEN_STATES_START_POSITION"]

# Top-level variables that match the following patterns will use the value in the `modular_xxx.py` file only if they are not None
ASSIGNMENTS_REGEX_TO_KEEP_IF_NOT_NONE = [r"_DOCSTRING"]


class ClassDependencyMapper(CSTVisitor):
    """A visitor which is designed to analyze a single class node to get all its dependencies that are shared with the set of
    `global_names`.
    """

    def __init__(
        self, class_name: str, global_names: set[str], objects_imported_from_modeling: Optional[set[str]] = None
    ):
        super().__init__()
        self.class_name = class_name
        self.dependencies = set()
        self.global_names = global_names
        self.objects_imported_from_modeling = (
            set() if objects_imported_from_modeling is None else objects_imported_from_modeling
        )

    def visit_Name(self, node):
        if (
            node.value != self.class_name
            and node.value in self.global_names
            and node.value not in self.objects_imported_from_modeling
        ):
            self.dependencies.add(node.value)


def dependencies_for_class_node(node: cst.ClassDef, global_names: set[str]) -> set:
    """Create immediate dependencies for a class node based on the `global_names`."""
    temp_module = cst.Module(body=[node])
    visitor = ClassDependencyMapper(node.name.value, global_names)
    temp_module.visit(visitor)
    return visitor.dependencies


def augmented_dependencies_for_class_node(
    node: cst.ClassDef, mapper: "ModuleMapper", objects_imported_from_modeling: Optional[set[str]] = None
) -> set:
    """Create augmented dependencies for a class node based on a `mapper`.
    Augmented dependencies means immediate dependencies + recursive function and assignments dependencies.
    """
    temp_module = cst.Module(body=[node])
    visitor = ClassDependencyMapper(node.name.value, set(mapper.global_nodes.keys()), objects_imported_from_modeling)
    temp_module.visit(visitor)
    return mapper.augment_dependencies(visitor.dependencies)


# All the potential file types to create
ALL_FILE_TYPES = (
    "modeling",
    "configuration",
    "tokenization",
    "processing",
    "image_processing",
    "video_processing",
    "feature_extractor",
)


class ModuleMapper(CSTVisitor, ABC):
    """An abstract visitor class which analyses a module, creating a mapping of dependencies for classes, functions and assignments.
    Class dependencies are computed with `compute_class_dependencies()`, while function and assignment dependencies are stored in
    `self.object_recursive_dependency_mapping` (can be computed by `_compute_recursive_object_dependencies()`).
    It defines common visiting patterns (i.e. common visit_xxx/leave_xxx functions) between the modular file and the
    modeling files that will be visited.
    """

    METADATA_DEPENDENCIES = (ParentNodeProvider, PositionProvider)

    def __init__(self, python_module: cst.Module):
        # fmt: off
        self.python_module: cst.Module = python_module             # original cst.Module being visited
        self.classes: dict[str, cst.ClassDef] = {}                 # mapping from class names to Nodes (it will be ordered by default!!)
        self.imports = []                                          # stores all import statements
        self.functions: dict[str, cst.FunctionDef] = {}            # mapping of global scope function names to Nodes
        self.object_dependency_mapping = defaultdict(set)          # immediate function/assignment dependency mapping (i.e. dependencies immediately in the function/assignment definition)
        self.assignments: dict[str, cst.SimpleStatementLine] = {}  # mapping of global assignments names to Nodes
        self.current_function = None                               # this keeps track of the current module-scope function
        self.current_class = None                                  # this keeps track of the current module-scope class
        self.current_assignment = None                             # this keeps track of the current module-scope assignment
        # this keeps track of objects imported from modeling files (`from .configuration import Config`) -> `Config` should not be a dependency
        self.objects_imported_from_modeling = set()
        # regex pattern joining every possible file type
        self.match_patterns = "|".join(ALL_FILE_TYPES)
        # fmt: on

    def visit_ImportFrom(self, node):
        """This keeps track of objects imported from neighbor modeling files (e.g. in `modeling_xxx.py, we have
        `from .configuration_xxx import Config`, then `Config` should be recorded as it is not a dependency that needs
        to be added (because it will be part of the imports)"""
        import_module = self.python_module.code_for_node(node.module)
        import_statement = "." * len(node.relative) + import_module
        if re.search(rf"^\.({self.match_patterns})_.*", import_statement):
            for imported_object in node.names:
                # If an alias is present, we record it and not the original name
                if imported_object.evaluated_alias is not None:
                    self.objects_imported_from_modeling.add(imported_object.evaluated_alias)
                else:
                    self.objects_imported_from_modeling.add(imported_object.evaluated_name)

    def visit_SimpleStatementLine(self, node):
        """
        Global Assigns like `GEMMA_INPUT_DOCSTRING = 'THIS IS THE INPUT'` and all import statements
        are extracted and saved in their corresponding dict. They are then used when updating dependency mappings.
        """
        parent_node = self.get_metadata(cst.metadata.ParentNodeProvider, node)
        simple_top_level_assign_structure = m.SimpleStatementLine(
            body=[m.Assign(targets=[m.AssignTarget(target=m.Name())])]
        )
        if m.matches(parent_node, m.Module()):
            if m.matches(node, simple_top_level_assign_structure):
                left_hand_side = node.body[0].targets[0].target.value
                self.current_assignment = left_hand_side
                self.assignments[left_hand_side] = node
            elif m.matches(node, m.SimpleStatementLine(body=[m.Import() | m.ImportFrom()])):
                self.imports.append(node)

    def leave_SimpleStatementLine(self, node):
        # No need to check for the parent here -> everytime we exit one, it should be None anyway independently of where the
        # SimpleStatement is located
        self.current_assignment = None

    def visit_FunctionDef(self, node):
        parent_node = self.get_metadata(cst.metadata.ParentNodeProvider, node)
        if m.matches(parent_node, m.Module()):
            self.current_function = node.name.value
            self.functions[node.name.value] = node

    def leave_FunctionDef(self, node):
        parent_node = self.get_metadata(cst.metadata.ParentNodeProvider, node)
        if m.matches(parent_node, m.Module()):
            self.current_function = None

    def visit_If(self, node):
        # If we are inside a function, do not add the import to the list of imports
        if self.current_function is None and self.current_class is None:
            for stmt in node.body.body:
                if m.matches(stmt, m.SimpleStatementLine(body=[m.ImportFrom() | m.Import()])):
                    self.imports.append(node)

    def visit_ClassDef(self, node: ClassDef) -> None:
        """Record class nodes to create their dependencies at the end."""
        self.classes[node.name.value] = node
        self.current_class = node.name.value

    def leave_ClassDef(self, node):
        self.current_class = None

    def visit_Name(self, node: cst.Call):
        """This is used to create a mapping from module-scope functions and assignments to objects used inside them."""
        if self.current_function is not None:
            self.object_dependency_mapping[self.current_function].add(node.value)
        if self.current_assignment is not None:
            self.object_dependency_mapping[self.current_assignment].add(node.value)

    def leave_Module(self, node):
        """When leaving the module, we store the position of each global scoped node to allow sorting the dependencies
        based on their position in the code later. We use the PositionProvider metadata wrapper for this.
        We also make sure to update `self.object_dependency_mapping` so that it contains only names recorded in
        `self.global_nodes`.
        """
        # assign all nodes
        self.global_nodes = {**self.assignments, **self.classes, **self.functions}
        # now sort the class dependency_mapping based on the position of the nodes
        self.start_lines = {}
        for id, node in self.global_nodes.items():
            self.start_lines[id] = self.get_metadata(cst.metadata.PositionProvider, node).start.line

    def _restrict_dependencies_to_known_entities(self):
        """Since we added every Name as part of `self.object_dependency_mapping`, we need to remove those that
        are not part of the recorded objects in `self.global_nodes` (i.e. built-in variables, imports, etc).
        This should be called only after all merging operations have been finalized!!"""
        global_objects = set(self.global_nodes.keys())
        for object_name, dependencies in self.object_dependency_mapping.items():
            self.object_dependency_mapping[object_name] = {dep for dep in dependencies if dep in global_objects}

    def _compute_recursive_object_dependencies(self) -> dict[str, set]:
        """Based on immediate dependency mapping, create the recursive dependency mapping. For example, given the
        following file:
        ```
        def foo():
            pass

        def bar():
            foo()

        def test():
            bar()
        ```
        this visitor can only record immediate dependencies, i.e. it will record the following
        `self.object_dependency_mapping = {"test": {"bar"}, "bar": {"foo}}`. This function is used to create
        the recursive mapping, i.e. `recursive_dependencies = {"test": {"bar", "foo"}, "bar": {"foo}}`.
        """
        recursive_dependencies = {}
        for object_name in self.object_dependency_mapping.keys():
            all_dependencies = find_all_dependencies(self.object_dependency_mapping, start_entity=object_name)
            recursive_dependencies[object_name] = all_dependencies
        return recursive_dependencies

    def augment_dependencies(self, dependencies: set[str]) -> set[str]:
        """For a set of `dependencies`, augment them by adding all potential dependencies of the **functions** and
        **assignments** present in the `dependencies`.
        """
        new_dependencies = dependencies.copy()
        # Go through the set of dependencies
        for dep in tuple(dependencies):
            if dep in self.object_recursive_dependency_mapping.keys():
                new_dependencies.update(self.object_recursive_dependency_mapping[dep])
        return new_dependencies

    def compute_class_dependencies(self):
        """For each visited class, find its dependencies based on visiting the current file + potential merged dependencies."""
        self.class_dependency_mapping = {}
        for class_name, class_node in self.classes.items():
            dependencies = dependencies_for_class_node(class_node, set(self.global_nodes.keys()))
            # Correctly augment class dependencies with all needed objects
            self.class_dependency_mapping[class_name] = self.augment_dependencies(dependencies)

    @abstractmethod
    def compute_relative_order(self, missing_dependencies: set) -> dict[str, int]:
        raise NotImplementedError


class ModelFileMapper(ModuleMapper):
    """A mapper designed to parse modeling files (like `modeling_llama.py`). When encountering such a file
    in the `modular_xxx.py` file, we need to correctly visit it and merge the dependencies of the modular and current file.
    For this reason, this class should only be instantiated from the class method `visit_and_merge_dependencies`, which takes
    care of correctly merging dependencies, then finalizes all dependency graph computations.
    Note that we only merge functions and assignments here, as classes will be treated later on as they may be modified.
    For example, if you redefine `apply_rotary_pos_emb()` in the modular, the new node should be used in the dependencies
    of the modeling files as well.
    """

    def __init__(self, python_module: cst.Module):
        super().__init__(python_module)

    def compute_relative_order(self, missing_dependencies: set[str]) -> dict[str, int]:
        """Compute in which relative order the `missing_dependencies` should appear when the nodes are added to the final file that
        will be created based on the modular.
        """
        relative_order = {}
        idx = 0
        classes = sorted(
            [dep for dep in tuple(missing_dependencies) if dep in self.classes], key=lambda x: self.start_lines[x]
        )
        # This is because for merged dependencies, we only have relative order in the other visited file, so we need
        # to track dependency order relative to a given class
        if len(classes) > 0 and not hasattr(self, "class_dependency_mapping"):
            raise ValueError("Cannot correctly find the relative order of the dependencies.")

        remaining_dependencies = missing_dependencies.copy()

        # Start by tracking relative order class by class
        for class_name in classes:
            class_dependencies = tuple(self.class_dependency_mapping[class_name] & remaining_dependencies)
            original_dependencies = []
            merged_dependencies = []
            # We need to differentiate between nodes that were already present (we can get relative order globally) and
            # nodes that were merged (we can get relative order only relative to the class the dependencies relate to)
            for class_dep in class_dependencies:
                if class_dep in self.start_lines:
                    original_dependencies.append(class_dep)
                else:
                    merged_dependencies.append(class_dep)
            # We need to sort deterministically before actual sorting, so that entries missing (i.e. with value 1e10)
            # will always get the same order independently of the system (they come from a set, which has no deterministic order)
            original_dependencies = sorted(original_dependencies, reverse=True)
            # Sort both list according to the order in their respective file
            original_dependencies = sorted(original_dependencies, key=lambda x: self.start_lines.get(x, 1e10))
            merged_dependencies = sorted(merged_dependencies, key=lambda x: self.modular_file_start_lines[x])

            # Add all original node first, then merged ones
            for dep in original_dependencies + merged_dependencies:
                remaining_dependencies.remove(dep)
                relative_order[dep] = idx
                idx += 1
            # Add the class itself (it can sometimes already be present if the order of classes in the source file
            # does not make sense, i.e. a class is used somewhere before being defined like in `rt_detr`...)
            if class_name in remaining_dependencies:
                remaining_dependencies.remove(class_name)
                relative_order[class_name] = idx
                idx += 1

        # Now add what still remains
        remaining_dependencies = tuple(remaining_dependencies)
        original_dependencies = []
        merged_dependencies = []
        for dep in remaining_dependencies:
            if dep in self.modular_file_start_lines:
                merged_dependencies.append(dep)
            else:
                original_dependencies.append(dep)
        # We need to sort deterministically before actual sorting, so that entries missing (i.e. with value 1e10)
        # will always get the same order independently of the system (they come from a set, which has no deterministic order)
        original_dependencies = sorted(original_dependencies, reverse=True)
        # Sort both list according to the order in their respective file
        original_dependencies = sorted(original_dependencies, key=lambda x: self.start_lines.get(x, 1e10))
        merged_dependencies = sorted(merged_dependencies, key=lambda x: self.modular_file_start_lines[x])

        # Add all original node first, then merged ones
        for dep in original_dependencies + merged_dependencies:
            relative_order[dep] = idx
            idx += 1

        return relative_order

    def _merge_functions(self, functions: dict[str, cst.CSTNode], object_mapping: dict[str, set]):
        """Update the global nodes and function dependency mapping with those from the modular file.

        Merging rule: if any function with the same name was redefined in the modular, use it and its dependencies
        instead of the original ones (this may mean to add new functions as well, if any redefined function uses a new one).
        """
        # Add/overwrite all needed function nodes and dependencies
        self.functions.update(functions)
        self.object_dependency_mapping.update(
            {obj: dep for obj, dep in object_mapping.items() if obj in functions.keys()}
        )
        # Add them to global nodes
        self.global_nodes.update(self.functions)

    def _merge_assignments(self, assignments: dict[str, cst.CSTNode], object_mapping: dict[str, set]):
        """Update the global nodes with the assignment from the modular file.

        Merging rule: if any assignment with the same name was redefined in the modular, we use it and its dependencies ONLY if it matches
        a pattern in `ASSIGNMENTS_REGEX_TO_KEEP_IF_NOT_NONE` and its value is not None, or if it matches a pattern in `ASSIGNMENTS_REGEX_TO_KEEP.
        Otherwise, we use the original value and dependencies. This rule was chosen to avoid having to rewrite the big docstrings.
        """
        for assignment, node in assignments.items():
            should_keep = any(re.search(pattern, assignment) for pattern in ASSIGNMENTS_REGEX_TO_KEEP)

            should_keep_if_not_none = any(
                re.search(pattern, assignment) for pattern in ASSIGNMENTS_REGEX_TO_KEEP_IF_NOT_NONE
            ) and not (hasattr(node.body[0].value, "value") and node.body[0].value.value == "None")

            if should_keep or should_keep_if_not_none or assignment not in self.assignments:
                self.assignments[assignment] = node
                if assignment in object_mapping:
                    self.object_dependency_mapping[assignment] = object_mapping[assignment]
        # Add them to global nodes
        self.global_nodes.update(self.assignments)

    def _merge_classes(self, classes: dict[str, cst.CSTNode]):
        """Update the global nodes with the new classes from the modular (i.e. classes which do not exist in current file, and
        are not imported). We do NOT update any dependency mapping here. This is because we only need the names of newly defined
        classes in the modular to be discoverable when computing dependencies for new nodes later on. For this reason, we
        do not add the new classes to `self.classes`, but only to `global_nodes`.
        """
        # Add/overwrite all needed function nodes and dependencies
        self.global_nodes.update(
            {
                name: node
                for name, node in classes.items()
                if name not in self.classes and name not in self.objects_imported_from_modeling
            }
        )

    def merge_modular_dependencies(self, classes, functions, assignments, object_mapping, start_lines):
        """Merge classes, functions and assignments from the modular definitions into the current module file,
        then record the relative order of all nodes.
        Note: This function takes care of updating `global_nodes` and `object_recursive_dependency_mapping` as well after the
        merge with other files dependencies.
        """
        self._merge_functions(functions, object_mapping)
        self._merge_assignments(assignments, object_mapping)
        self._merge_classes(classes)
        self.modular_file_start_lines = start_lines

        # Restrict the dependency mappings to the known entities to avoid Python's built-ins and imports
        self._restrict_dependencies_to_known_entities()
        # Create the global mapping of recursive dependencies for functions and assignments
        self.object_recursive_dependency_mapping = self._compute_recursive_object_dependencies()

    @classmethod
    def visit_and_merge_dependencies(
        cls, module: cst.Module, classes, functions, assignments, object_mapping, start_lines
    ) -> "ModelFileMapper":
        wrapper = MetadataWrapper(module)
        mapper = cls(module)
        wrapper.visit(mapper)
        # Merge dependencies
        mapper.merge_modular_dependencies(classes, functions, assignments, object_mapping, start_lines)
        # Create the class dependencies graph
        mapper.compute_class_dependencies()
        return mapper


def common_partial_suffix(str1: str, str2: str) -> str:
    """Return the biggest common suffix between 2 strings. If one string is a full suffix of the other string,
    we do not consider it a common suffix and return `""`"""
    common_suffix = ""
    for i in range(1, min(len(str1), len(str2)) + 1):
        if str1[-i] == str2[-i]:
            common_suffix = str1[-i] + common_suffix
        else:
            break
    # We do not allow full string suffix
    if common_suffix == str1 or common_suffix == str2:
        common_suffix = ""
    return common_suffix


def replace_class_node(
    mapper: ModelFileMapper, class_node: cst.ClassDef, renamed_super_class: str, original_super_class: str
):
    """
    Replace a class node which inherits from another modeling class. This function works in the following way:
    - start from the base class node of the inherited class (a cst.Node)
    - replace all methods of the base node with the methods defined in the child class
    - append all new methods defined in the child class
    - replace all calls to super() with the unravelled code

                    |    ```python                          |               |    ```python
                    |    class GemmaModel(LlamaModel):      |               |       class GemmaModel(nn.Module):
                    |        def __init__(self):            |               |           def __init__(self):
    Going from:     |            super().__init__()         |       to:     |               super().__init__(config)
                    |            self.dropout = 0.2         |               |               self.dropout = 0.2
                    |     ```                               |               |               self.padding_idx = config.pad_token_id
                                                                            |               self.vocab_size = config.vocab_size
                                                                            |               self.embed_tokens = nn.Embedding(config.vocab_size, config.hidden_size, self.padding_idx)
                                                                            |               self.layers = nn.ModuleList(
                                                                            |                   [LlamaDecoderLayer(config, layer_idx) for layer_idx in range(config.num_hidden_layers)]
                                                                            |               )
                                                                            |               self.norm = LlamaRMSNorm(config.hidden_size, eps=config.rms_norm_eps)
                                                                            |               self.gradient_checkpointing = False
                                                                            |               # Initialize weights and apply final processing
                                                                            |               self.post_init()
                                                                            |     ```
    """
    all_bases = [get_full_attribute_name(k.value) for k in class_node.bases]
    if any(base is None for base in all_bases):
        raise ValueError(f"Could not parse the name of the bases for {class_node.name.value}")

    original_node = mapper.classes[renamed_super_class]
    # Always use the new name of the class (in case we use e.g. `ColPaliForRetrieval` inheriting from `PaliGemmaForConditionalGeneration`)
    new_name = class_node.name

    # If the new class name is different from the renamed super class name, we need to update the docstrings/comments accordingly
    if new_name.value != renamed_super_class:
        common_suffix = common_partial_suffix(new_name.value, renamed_super_class)
        # Note that this works even without common prefix, in which case it does not replace anything
        old, new = renamed_super_class.replace(common_suffix, ""), new_name.value.replace(common_suffix, "")
        temp_module = cst.Module(body=[original_node])
        original_node = temp_module.visit(
            ReplaceNameTransformer(get_lowercase_name(old), get_lowercase_name(new), only_doc=True)
        ).body[0]

    # If we explicitly passed a new base with common suffix to an old base, it is for switching the prefix
    # e.g. if the "natural" parent class is `PreTrainedModel` but we wanted to rename it to `PreTrainedVisionModel`
    additional_bases = [base for base in all_bases if base != original_super_class]
    new_bases = []
    for original_base in original_node.bases:
        new_base = original_base
        # we only potentially switch base for Name-based bases, not Attribute
        if m.matches(original_base.value, m.Name()):
            original_base_name = original_base.value.value
            for additional_base_name in additional_bases:
                suffix = common_partial_suffix(original_base_name, additional_base_name)
                if len(suffix) > 0 and suffix[0].isupper():
                    new_name_node = original_base.value.with_changes(value=additional_base_name)
                    new_base = original_base.with_changes(value=new_name_node)
                    break
        new_bases.append(new_base)

    original_methods = {
        f.name.value if hasattr(f, "name") else mapper.python_module.code_for_node(f): f
        for f in original_node.body.body
    }
    updated_methods = {
        f.name.value if hasattr(f, "name") else mapper.python_module.code_for_node(f): f for f in class_node.body.body
    }
    end_meth = []

    assign_targets = {}
    docstring_node = []
    # Iterate directly from node.body as there can be property/setters with same names which are overwritten when we use a dict
    for func in original_node.body.body:
        name = func.name.value if hasattr(func, "name") else mapper.python_module.code_for_node(func)
        if m.matches(func, m.FunctionDef()) and name in updated_methods and updated_methods[name] is not None:
            new_params = updated_methods[name].params
            # Replace the method in the replacement class, preserving decorators
            kwarg_name = getattr(updated_methods[name].params, "star_kwarg", None)
            if kwarg_name and kwarg_name.name.value == "super_kwargs":
                parent_params = {k.name.value: k for k in func.params.params}
                parent_params.update({k.name.value: k for k in new_params.params[1:]})
                new_params = new_params.with_changes(
                    params=list(parent_params.values()), star_kwarg=func.params.star_kwarg
                )
            # Keep decorators in `modular_xxx.py` if any, else original decorators
            new_decorators = (
                updated_methods[name].decorators if len(updated_methods[name].decorators) > 0 else func.decorators
            )

            # Keep return annotation in `modular_xxx.py` if any, else original return annotation
            new_return_annotation = updated_methods[name].returns if updated_methods[name].returns else func.returns

            if not re.match(
                r"\ndef .*\(.*\):\n    raise.*Error\(.*",
                mapper.python_module.code_for_node(updated_methods[name]),
            ):
                func = func.with_changes(
                    body=updated_methods[name].body,
                    params=new_params,
                    decorators=new_decorators,
                    returns=new_return_annotation,
                )
            else:
                continue

        if m.matches(func, m.SimpleStatementLine(body=[m.Assign()])):
            target = mapper.python_module.code_for_node(func.body[0].targets[0])
            assign_targets[target] = func
        elif m.matches(func, m.SimpleStatementLine(body=[m.AnnAssign()])):
            target = mapper.python_module.code_for_node(func.body[0].target)
            assign_targets[target] = func
        elif m.matches(func, DOCSTRING_NODE):
            docstring_node = [func]
        else:
            end_meth.append(func)

    # Port new methods that are defined only in modular-file and append at the end
    for func in class_node.body.body:
        name = func.name.value if hasattr(func, "name") else mapper.python_module.code_for_node(func)
        if m.matches(func, DOCSTRING_NODE):  # This processes the docstring of the class!
            # Extract the original docstring
            updated_docstring = func.body[0].value.value
            if len(docstring_node) == 0:  # If the original docstring is empty, just create one from the updated.
                docstring_node = [
                    cst.SimpleStatementLine(body=[cst.Expr(value=cst.SimpleString(value=updated_docstring))])
                ]
            else:
                original_docstring = docstring_node[0].body[0].value.value
                merged_doc = merge_docstrings(original_docstring, updated_docstring)
                # Update the docstring in the original function
                docstring_node = [
                    docstring_node[0].with_changes(body=[cst.Expr(value=cst.SimpleString(value=merged_doc))])
                ]
        if name not in original_methods and func is not None and isinstance(func, cst.FunctionDef):
            end_meth.append(func)
        if m.matches(func, m.SimpleStatementLine(body=[m.Assign()])):
            # TODO we only use single assign might cause issues
            target = mapper.python_module.code_for_node(func.body[0].targets[0])
            assign_targets[target] = func
        if m.matches(func, m.SimpleStatementLine(body=[m.AnnAssign()])):
            target = mapper.python_module.code_for_node(func.body[0].target)
            assign_targets[target] = func
    end_meth = docstring_node + list(assign_targets.values()) + end_meth

    # Replace the calls to `super()` with the unrolled code
    result_node = original_node.with_changes(body=cst.IndentedBlock(body=end_meth))
    temp_module = cst.Module(body=[result_node])
    new_module = MetadataWrapper(temp_module)
    new_replacement_class = new_module.visit(
        SuperTransformer(temp_module, original_methods, updated_methods, all_bases)
    )
    new_replacement_body = new_replacement_class.body[0].body  # get the indented block

    # Use decorators redefined in `modular_xxx.py` if any
    new_decorators = class_node.decorators if len(class_node.decorators) > 0 else original_node.decorators

    return original_node.with_changes(
        body=new_replacement_body, decorators=new_decorators, bases=new_bases, name=new_name
    )


TYPE_TO_FILE_TYPE = {
    "Config": "configuration",
    "Tokenizer": "tokenization",
    "Processor": "processing",
    "ImageProcessor": "image_processing",
    "ImageProcessorFast": "image_processing*_fast",  # "*" indicates where to insert the model name before the "_fast" suffix
    "VideoProcessor": "video_processing",
    "VideoProcessorInitKwargs": "video_processing",
    "FastImageProcessorKwargs": "image_processing*_fast",
    "FeatureExtractor": "feature_extractor",
    "ProcessorKwargs": "processing",
    "VideosKwargs": "processing",
    "ImagesKwargs": "processing",
    "TextKwargs": "processing",
}


def find_file_type(class_name: str) -> str:
    """Based on a class name, find the file type corresponding to the class.
    If the class name is `LlamaConfig` it will return `configuration`.
    The list of suffixes is in `TYPE_TO_FILE_TYPE`. If there are no match, we match by default to `modeling`
    """
    match_pattern = "|".join(TYPE_TO_FILE_TYPE.keys())
    match = re.search(rf"({match_pattern})$", class_name)
    if match:
        file_type = TYPE_TO_FILE_TYPE[match.group(1)]
    else:
        file_type = "modeling"
    return file_type


# These top-level variables will always appear at the very beginning of the file, in the order they are defined in
# this list (this is to avoid having variables at weird places, even if they are not used before)
VARIABLES_AT_THE_BEGINNING = (
    "logger",
    "_CHECKPOINT_FOR_DOC",
    "_CONFIG_FOR_DOC",
)

# These specific modeling imports should not be visited as other modeling files
IMPORTS_TO_SKIP_IN_MODULAR = ("auto.modeling_auto",)


def append_new_import_node(
    node: cst.CSTNode, unused_imports: set[str], added_names: set, imports_to_keep: list[cst.CSTNode]
):
    """Insert the new `node` to the list of `imports_to_keep` in-place, if it is not part of the `unused_imports` or `added_names`.
    Also modifies `added_names` in-place accordingly."""
    import_node = node.body[0]
    names_to_keep = []
    for name in import_node.names:
        name_value = name.evaluated_alias or name.evaluated_name
        if name_value not in unused_imports and name_value not in added_names:
            names_to_keep.append(name.with_changes(comma=cst.MaybeSentinel.DEFAULT))
            added_names.add(name_value)
    if len(names_to_keep) > 0:
        new_node = node.with_changes(body=[import_node.with_changes(names=names_to_keep)])
        imports_to_keep.append(new_node)


def get_needed_imports(body: dict[str, dict], all_imports: list[cst.CSTNode]) -> list[cst.CSTNode]:
    """Get all the imports needed in the `body`, from the list of `all_imports`.
    `body` is a dict with the following structure `{str: {"insert_idx": int, "node": cst.CSTNode}}`.
    Note: we need to use `isinstance` on scope assignments, m.matches apparently does not work here yet!
    """
    new_body = [k[1]["node"] for k in sorted(body.items(), key=lambda x: x[1]["insert_idx"])]
    wrapper = MetadataWrapper(cst.Module(body=all_imports + new_body))
    scopes = set(wrapper.resolve(ScopeProvider).values())
    unused_imports = set()
    import_ref_count = defaultdict(lambda: 0)
    for scope in scopes:
        for assignment in scope.assignments:
            node = assignment.node
            if isinstance(assignment, cst.metadata.Assignment) and isinstance(node, (cst.Import, cst.ImportFrom)):
                ref_count = len(assignment.references)
                name = assignment.name
                import_ref_count[name] = max(ref_count, import_ref_count[name])
    # Similar imports may be redefined, and only used between their 1st and 2nd definition so if we already have
    # a ref count > 0 at any point, the imports is actually used
    unused_imports = {name for name, count in import_ref_count.items() if count <= 0 or name in body.keys()}

    imports_to_keep = []
    # We need to keep track of which names were already imported, because some import may be duplicated from multiple sources
    # or be both protected and unprotected due to inconsistency between models
    added_names = set()
    existing_protected_statements = set()  # str repr of the import nodes - does not work with the nodes directly
    for node in all_imports:
        if m.matches(node, m.If()):  # handle safe imports
            new_statements = []
            for stmt_node in node.body.body:
                append_new_import_node(stmt_node, unused_imports, added_names, new_statements)
            new_statements = [stmt for stmt in new_statements if str(stmt) not in existing_protected_statements]
            if len(new_statements) > 0:
                new_node = node.with_changes(body=node.body.with_changes(body=new_statements))
                imports_to_keep.append(new_node)
                existing_protected_statements.update({str(stmt) for stmt in new_statements})
        else:
            append_new_import_node(node, unused_imports, added_names, imports_to_keep)

    protected_import_nodes = [node for node in imports_to_keep if m.matches(node, m.If())]
    usual_import_nodes = [node for node in imports_to_keep if not m.matches(node, m.If())]

    # Protected imports always appear at the end of all imports
    return usual_import_nodes + protected_import_nodes


def split_all_assignment(node: cst.CSTNode) -> dict[str, cst.CSTNode]:
    """Split the `__all__` assignment found in the modular between each corresponding files."""
    all_all_per_file = {}
    assign_node = node.body[0]
    if isinstance(assign_node.value, cst.List):
        # Extract the elements from the list
        all_all_to_add = defaultdict(list)
        for element in assign_node.value.elements:
            if isinstance(element.value, cst.SimpleString):
                # Remove quotes and add the string to the elements list
                class_name = element.value.value
                file = find_file_type(element.value.evaluated_value)
                all_all_to_add[file] += [class_name]
        for file, new_alls in all_all_to_add.items():
            new_node = assign_node.with_changes(
                value=cst.List(elements=[cst.Element(value=cst.SimpleString(value=k)) for k in new_alls])
            )
            all_all_per_file[file] = node.with_changes(body=[new_node])
    return all_all_per_file


class ModularFileMapper(ModuleMapper):
    """This is a Mapper to visit a modular file (like `modular_llama.py`). It visits the whole file, recording dependency,
    then visits all imported modeling files (like `modeling_llama.py`), and manages their mutual dependencies.
    Calling the method `create_modules()` after visit will create all modules based on this modular file.
    """

    def __init__(self, python_module, new_name):
        super().__init__(python_module)
        # fmt: off
        self.model_name = new_name  # name of the model being defined. Should be in the format of `llama` or `layout_xlm` or `phi3`

        self.model_specific_imported_objects: dict[str, str] = {}  # e.g. {"LlamaModel": "transformers.models.llama.modeling_llama"}
        self.model_specific_modules: dict[str, cst.Module] = {}  # e.g. {"transformers.models.llama.modeling_llama": cst.Module}

        self.all_all_to_add = {}
        # fmt: on

    def visit_ImportFrom(self, node: cst.ImportFrom) -> None:
        """When visiting imports from modeling files (i.e. `transformers.models.xxx`) we get the code, parse it,
        and save it in `self.model_specific_modules` to later visit. The imported objects are saved in `self.model_specific_imported_objects`.
        """
        import_module = self.python_module.code_for_node(node.module)
        import_statement = "." * len(node.relative) + import_module
        if any(import_to_skip in import_statement for import_to_skip in IMPORTS_TO_SKIP_IN_MODULAR):
            return
        if m.matches(node.module, m.Attribute()):
            for imported_ in node.names:
                _import = re.search(
                    rf"(?:transformers\.models\.)|(?:\.\.)\w+\.({self.match_patterns})_.*", import_statement
                )
                if _import:
                    source = _import.group(1)
                    if source == "modeling" and "Config" in self.python_module.code_for_node(imported_):
                        raise ValueError(
                            f"You are importing {self.python_module.code_for_node(imported_)} from the modeling file. Import from the `configuration_xxxx.py` file instead"
                        )
                    if import_module not in self.model_specific_modules:
                        if "models" not in import_module:
                            import_module = "models." + import_module
                        if "transformers" not in import_module:
                            import_module = "transformers." + import_module
                        source_code = get_module_source_from_name(import_module)
                        tree = cst.parse_module(source_code)
                        self.model_specific_modules[import_module] = tree
                    imported_object = self.python_module.code_for_node(imported_.name)
                    self.model_specific_imported_objects[imported_object] = import_module
        if m.matches(node.module, m.Name()):
            if "transformers" == import_module:
                raise ValueError(
                    f"You are importing from {import_module} directly using global imports. Import from the correct local path"
                )

    def visit_SimpleStatementLine(self, node):
        """If we visit an import statement not previously visited, record it. If we visit a module-scope assignment,
        simply record it or, if it is `__all__`, split it between files where we should dispatch it.
        """
        parent_node = self.get_metadata(cst.metadata.ParentNodeProvider, node)
        simple_top_level_assign_structure = m.SimpleStatementLine(
            body=[m.Assign(targets=[m.AssignTarget(target=m.Name())])]
        )
        if m.matches(parent_node, m.Module()):
            if m.matches(node, m.SimpleStatementLine(body=[m.Import()])):
                self.imports.append(node)
            elif m.matches(node, m.SimpleStatementLine(body=[m.ImportFrom()])):
                import_module = self.python_module.code_for_node(node.body[0].module)
                import_statement = "." * len(node.body[0].relative) + import_module
                if not (
                    re.search(rf"(?:transformers\.models\.)|(?:\.\.)\w+\.({self.match_patterns})_.*", import_statement)
                    and not any(import_to_skip in import_statement for import_to_skip in IMPORTS_TO_SKIP_IN_MODULAR)
                ):
                    self.imports.append(node)
            elif m.matches(node, simple_top_level_assign_structure):
                assigned_variable = node.body[0].targets[0].target.value
                # __all__ is treated differently and not added to general assignments
                if assigned_variable == "__all__":
                    self.all_all_to_add = split_all_assignment(node)
                else:
                    self.current_assignment = assigned_variable
                    self.assignments[assigned_variable] = node

    def leave_Module(self, node):
        """When we leave the modular file, we do the following in order:
        1. for each modeling file found in the imports, rename it with the new model name, visit it, and update
        its dependency graph with the new function and assignment definitions found in the modular
        2. update the modular dependency graph with the imported functions and assignments (found when visiting the matching files)
        3. compute the nested (recursive) function and assignment dependencies
        """
        # Takes care of finalizing our visit
        super().leave_Module(node)

        # 1. for each modeling file found in the imports, rename it with the new model name, visit it, and update dependencies
        self.visited_modules = {}
        self.renamers = {}
        name_prefixes = self.infer_new_model_name()
        for file, module in self.model_specific_modules.items():
            file_model_name = file.split(".")[-2]
            new_name = name_prefixes[file]
            renamer = ReplaceNameTransformer(file_model_name, new_name, self.model_name)
            renamed_module = module.visit(renamer)
            self.visited_modules[file] = ModelFileMapper.visit_and_merge_dependencies(
                renamed_module,
                self.classes,
                self.functions,
                self.assignments,
                self.object_dependency_mapping,
                self.start_lines,
            )
            # We record it so that we can rename classes later the exact same way
            self.renamers[file] = renamer

        # 2. in turn, we need to add the imported functions/assignments to the dependencies of the modular mapper, using the
        # definitions found in the visited files
        self.merge_model_specific_imports(self.visited_modules)

        # 3. compute the nested (recursive) function and assignment dependencies
        self.object_recursive_dependency_mapping = self._compute_recursive_object_dependencies()

        # We need to keep track of which objects were imported directly into which modeling file to not add them wrongly later
        # Note that we may visit several of the same file types, thus we save them per file type, not file
        self.imported_objects_per_file = defaultdict(set)
        for file, mapper in self.visited_modules.items():
            file_type = re.search(rf"^transformers\.models\.\w+\.({self.match_patterns})_.*", file).group(1)
            self.imported_objects_per_file[file_type].update(mapper.objects_imported_from_modeling)

    def merge_model_specific_imports(self, visited_modules):
        """Merge the functions and assignments imported from the modeling files to the modular nodes and dependency graph,
        based on the visited files."""
        self.start_lines_file_mapping = {}
        self.added_objects_file_mapping = {}
        for object_name, file in self.model_specific_imported_objects.items():
            visited_module = visited_modules[file]
            self.start_lines_file_mapping[file] = visited_module.start_lines
            # Add functions and their dependencies
            if object_name in visited_module.functions and object_name not in self.functions:
                self.functions[object_name] = visited_module.functions[object_name]
                self.added_objects_file_mapping[object_name] = file
                dependencies = visited_module.object_dependency_mapping.get(object_name, None)
                if dependencies is not None:
                    self.object_dependency_mapping[object_name] = dependencies
                    for dep in dependencies:
                        if dep not in self.global_nodes:
                            self.added_objects_file_mapping[dep] = file
                            self.functions[dep] = visited_module.global_nodes[dep]

                # Add/overwrite the imported functions to other visited modules as well, in case it is absent/different
                # in he modeling source file of the inherited class. See `examples/modular-tranformers/modular_switch_function.py`
                # and `examples/modular-tranformers/modular_add_function.py` for examples
                recursive_dependencies = visited_module.object_recursive_dependency_mapping.get(object_name, set())
                node_recursive_dependencies_mapping = {
                    dep: visited_module.global_nodes[dep] for dep in recursive_dependencies
                }
                for filename, module_mapper in self.visited_modules.items():
                    if filename != file:
                        module_mapper.global_nodes[object_name] = visited_module.functions[object_name]
                        if len(recursive_dependencies) > 0:
                            module_mapper.object_recursive_dependency_mapping[object_name] = recursive_dependencies
                            module_mapper.global_nodes.update(node_recursive_dependencies_mapping)

            # Add assignments and their dependencies
            elif object_name in visited_module.assignments and object_name not in self.assignments:
                self.assignments[object_name] = visited_module.assignments[object_name]
                self.added_objects_file_mapping[object_name] = file
                dependencies = visited_module.object_dependency_mapping.get(object_name, None)
                if dependencies is not None:
                    self.object_dependency_mapping[object_name] = dependencies
                    for dep in dependencies:
                        if dep not in self.global_nodes:
                            self.added_objects_file_mapping[dep] = file
                            self.assignments[dep] = visited_module.global_nodes[dep]

        # Do not forget to re-assign all nodes after the merge
        self.global_nodes = {**self.assignments, **self.classes, **self.functions}
        # And restric dependencies to those nodes only
        self._restrict_dependencies_to_known_entities()

    def compute_relative_order(self, missing_dependencies: set) -> dict[str, int]:
        """Compute in which relative order the `missing_dependencies` should appear when the nodes are added to the final file that
        will be created based on the modular.
        """
        relative_order = {}
        idx = 0

        original_dependencies = []
        other_files_dependencies = defaultdict(list)
        for dep in tuple(missing_dependencies):
            if dep in self.added_objects_file_mapping:
                file = self.added_objects_file_mapping[dep]
                other_files_dependencies[file].append(dep)
            else:
                original_dependencies.append(dep)
        # Sort all lists according to the order in their respective file
        all_dependencies = []
        for file, dependencies in other_files_dependencies.items():
            sorted_dependencies = sorted(dependencies, key=lambda x: self.start_lines_file_mapping[file][x])
            all_dependencies += sorted_dependencies
        all_dependencies += sorted(original_dependencies, key=lambda x: self.start_lines[x])

        # Add all original node first, then merged ones (one file at a time)
        for dep in all_dependencies:
            relative_order[dep] = idx
            idx += 1

        return relative_order

    def infer_new_model_name(self) -> dict:
        """Infer whether we are using a model name prefix different from the usual model name as defined from the filename.
        This is useful e.g. when we define a new multi-modal model, and only the text part inherits from `LlamaModel`,
        so we have something like:
        ```python
        class NewModelNameTextDecoderLayer(LlamaDecoderLayer):
            pass
        ```
        with the `Text` prefix added to the model name.
        However, in case of multiple prefix used, we raise a warning and use the most frequent prefix, to avoid parsing
        the same file multiple times and inconsistencies in the objects added from dependencies.
        If the new prefix collides with a prefix of another class in the file where we are importing from, then we also
        raise a warning, and use the default prefix (model name) to avoid collisions in dependencies.
        """
        prefix_model_name_mapping = defaultdict(Counter)
        cased_default_name = get_cased_name(self.model_name)
        # Iterate over all new classes to get modeling super classes
        for class_name, class_node in self.classes.items():
            modeling_bases = [
                k.value.value for k in class_node.bases if k.value.value in self.model_specific_imported_objects
            ]
            if len(modeling_bases) > 1:
                raise ValueError(
                    f"{class_name} was defined with more than 1 model-specific super class. This is unsupported. We found {(*modeling_bases,)}."
                )
            if len(modeling_bases) == 1:
                filename = self.model_specific_imported_objects[modeling_bases[0]]
                cased_model_name = cased_default_name  # the default name prefix
                suffix = common_partial_suffix(class_name, modeling_bases[0])
                if len(suffix) > 0 and suffix[0].isupper():
                    cased_model_name = class_name.replace(suffix, "")
                    # If both the old model and new model share the last part of their name, is is detected as a common
                    # suffix, but it should not be the case -> use the full name in this case
                    if len(cased_model_name) < len(cased_default_name) and cased_default_name in class_name:
                        cased_model_name = cased_default_name
                prefix_model_name_mapping[filename].update([cased_model_name])

        # Check if we found multiple prefixes for some modeling files
        final_name_mapping = {}
        for file, prefixes_counter in prefix_model_name_mapping.items():
            if len(prefixes_counter) > 1:
                _, total = prefixes_counter.most_common(1)[0]
                most_used_entities = [name for name, count in prefixes_counter.most_common() if count == total]
                # if the default name is in the pool of equally used prefixes, use it, otherwise last encountered
                final_name = cased_default_name if cased_default_name in most_used_entities else most_used_entities[-1]
            else:
                final_name = list(prefixes_counter)[0]
            # Check if the prefix can be used without collisions in the names
            old_cased_model_name = get_cased_name(file.split(".")[-2])
            old_model_name_prefix = final_name.replace(cased_default_name, old_cased_model_name)
            # Raise adequate warning depending on the situation
            has_prefix_collision = f"\nclass {old_model_name_prefix}" in get_module_source_from_name(file)
            if final_name != cased_default_name and has_prefix_collision:
                if len(prefixes_counter) > 1:
                    logger.warning(
                        f"We detected multiple prefix names when inheriting from {file}: {(*set(prefixes_counter),)}. However, the "
                        f"most used one, '{final_name}', is already present in the source file and will likely cause consistency "
                        f"issues. For this reason we fallback to the default prefix '{cased_default_name}' when grabbing args "
                        "and dependencies. Make sure to subclass the intermediate classes with the prefix you want (if different "
                        f"from '{cased_default_name}') or use a single prefix in all the modular (best)."
                    )
                else:
                    logger.warning(
                        f"We detected the use of the new default prefix {final_name} when inheriting from {file}. However, it is "
                        "already present in the source file and will likely cause consistency issues. For this reason we fallback "
                        f"to the default prefix '{cased_default_name}' when grabbing args and dependencies. Make sure to subclass "
                        f"the intermediate classes with the prefix you want (if different from '{cased_default_name}')"
                    )
                final_name = cased_default_name
            elif len(prefixes_counter) > 1:
                logger.warning(
                    f"We detected multiple prefix names when inheriting from {file}: {(*set(prefixes_counter),)}. We will only "
                    f"use the most used '{final_name}' prefix when grabbing args and dependencies. Make sure to subclass the "
                    f"intermediate classes with the prefix you want (if different from '{final_name}') or use a single prefix "
                    "in all the modular (best)."
                )
            final_name_mapping[file] = get_lowercase_name(final_name)

        # Check we are not missing imported files
        for file in self.model_specific_modules.keys():
            if file not in final_name_mapping.keys():
                final_name_mapping[file] = self.model_name

        return final_name_mapping


def check_dependencies_and_create_import_node(
    file_type: str, new_dependencies: set[str], mapper: ModuleMapper, new_name: str
) -> tuple[set[str], dict[str, cst.CSTNode]]:
    """Check that all class nodes in the `new_dependencies` belong to the correct `file_type`. If this is not the case,
    we need to remove it from the dependencies, and create a new import to it instead.
    This scenario may appear in the following case:
    If a new class in the `modular_xxx.py` file does not belong to `type_xxx.py`, but is used somewhere in `other_type_xxx.py`
    (e.g. as a type hint), but none of the visited files had a similar class, then it would be imported in `type_xxx.py` as
    part of the standard dependency graph (because we never encountered an import towards this new class in any file).
    For example imagine the following `modular.py`:
    ```
    from ..llama.modeling_llama import LlamaModel

    class NewNameTextConfig(PretrainedConfig):
        ...

    class NewNameConfig(PretrainedConfig):
        ...

    class NewNameModel(LlamaModel):
        config = NewNameConfig()
        text_config = NewNameTextConfig()
        ...
    ```
    then without the help of this function, `NewNameTextConfig` would be imported in the `modeling_newname.py` as well as
    `configuration_newname.py`, because `modeling_llama.py` tells us to not import `NewNameConfig`, but has no
    knowledge of `NewNameTextConfig`.
    """
    class_dependencies = {dep for dep in new_dependencies if m.matches(mapper.global_nodes[dep], m.ClassDef())}
    corrected_dependencies = new_dependencies.copy()
    new_imports = {}
    for class_name in class_dependencies:
        class_file_type = find_file_type(class_name)
        # In this case, we need to remove it from the dependencies and create a new import instead
        if class_file_type != file_type:
            corrected_dependencies.remove(class_name)
            import_statement = f"from .{class_file_type}_{new_name} import {class_name}"
            new_imports[class_name] = cst.parse_statement(import_statement)

    return corrected_dependencies, new_imports


def get_class_node_and_dependencies(
    modular_mapper: ModularFileMapper, class_name: str, node: cst.CSTNode, files: dict[str, dict]
) -> tuple[dict, str, dict]:
    """Return a single class node (and all its dependency nodes), to be added to the `files`. It creates the new
    class node based on the inherited classes if needed. Also returns any new imports of a new class defined in
    the modular that we nay need.
    """
    # An exception was already raised if this has len > 1
    model_specific_bases = [
        k.value.value for k in node.bases if k.value.value in modular_mapper.model_specific_imported_objects
    ]
    super_class = model_specific_bases[0] if len(model_specific_bases) == 1 else None

    file_type = find_file_type(class_name)
    file_to_update = files[file_type]
    model_name = modular_mapper.model_name

    # This is used to avoid adding objects to the dependencies graph if they will be imported already
    imported_objects = modular_mapper.imported_objects_per_file[file_type]

    # We need to replace the class node with the transformers (modeling file) super class node
    if super_class is not None:
        super_file_name = modular_mapper.model_specific_imported_objects[super_class]

        # Get the mapper corresponding to the inherited class
        mapper = modular_mapper.visited_modules[super_file_name]
        # Rename the super class according to the exact same rule we used when renaming the whole module
        renamer = modular_mapper.renamers[super_file_name]
        renamed_super_class = preserve_case_replace(super_class, renamer.patterns, renamer.cased_new_name)

        # Create the new class node
        updated_node = replace_class_node(mapper, node, renamed_super_class, super_class)

        # Grab all immediate dependencies of the new node
        new_node_dependencies = augmented_dependencies_for_class_node(updated_node, mapper, imported_objects)

        # At this point, if any class dependency is found, but belongs to another file, it means that we need to remove
        # it from the dependencies, and add a new import of it instead
        new_node_dependencies, new_imports = check_dependencies_and_create_import_node(
            file_type, new_node_dependencies, mapper, model_name
        )

        # The node was modified -> look for all recursive dependencies of the new node
        all_dependencies_to_add = find_all_dependencies(
            dependency_mapping=mapper.class_dependency_mapping,
            initial_dependencies=new_node_dependencies,
            initial_checked_dependencies=set(file_to_update.keys()),
        )

        relative_dependency_order = mapper.compute_relative_order(all_dependencies_to_add)
        nodes_to_add = {
            dep: (relative_dependency_order[dep], mapper.global_nodes[dep]) for dep in all_dependencies_to_add
        }

    # No transformers (modeling file) super class, just check functions and assignments dependencies
    else:
        updated_node = node
        # The node was NOT modified -> no need to look recursively for other class dependencies. Indeed, even if they are not
        # already defined (which would mean a weird order of the code in the modular...), they will be in the future
        all_dependencies_to_add = augmented_dependencies_for_class_node(updated_node, modular_mapper, imported_objects)

        # At this point, if any class dependency is found, but belongs to another file, it means that we need to remove
        # it from the dependencies, and add a new import of it instead
        all_dependencies_to_add, new_imports = check_dependencies_and_create_import_node(
            file_type, all_dependencies_to_add, modular_mapper, model_name
        )

        relative_dependency_order = modular_mapper.compute_relative_order(all_dependencies_to_add)
        nodes_to_add = {
            dep: (relative_dependency_order[dep], modular_mapper.global_nodes[dep])
            for dep in all_dependencies_to_add
            if dep not in file_to_update.keys()
        }

    # Add the class node itself to the nodes to add
    class_idx = max(relative_dependency_order.values()) + 1 if len(relative_dependency_order) > 0 else 0
    nodes_to_add[class_name] = (class_idx, updated_node)

    return nodes_to_add, file_type, new_imports


def create_modules(modular_mapper: ModularFileMapper) -> dict[str, cst.Module]:
    """Create all the new modules based on visiting the modular file. It replaces all classes as necessary."""
    files = defaultdict(dict)
    current_file_indices = defaultdict(lambda: 0)

    # For each class defined in modular, potentially replace the node and add it with its dependencies
    for class_name, node in modular_mapper.classes.items():
        nodes_to_add, file_type, new_imports = get_class_node_and_dependencies(modular_mapper, class_name, node, files)

        # Add the new potential new imports that we may need to the `modular_mapper` variable
        modular_mapper.imported_objects_per_file[file_type].update(new_imports.keys())
        modular_mapper.imports.extend(list(new_imports.values()))

        # Sort the nodes according to their relative order
        nodes_to_add = sorted(nodes_to_add.items(), key=lambda x: x[1][0])
        # Write all nodes to file
        for dependency, (_, node) in nodes_to_add:
            # This is used to keep certain variables at the beginning of the file
            try:
                # The -1000 is arbitrary -> just keep it bigger than the list
                idx = -1000 + VARIABLES_AT_THE_BEGINNING.index(dependency)
            except ValueError:
                idx = current_file_indices[file_type]
                current_file_indices[file_type] += 1
            files[file_type][dependency] = {"insert_idx": idx, "node": node}

    # Add the __all__ statement to files at the end
    for file_type, node in modular_mapper.all_all_to_add.items():
        idx = current_file_indices[file_type]
        files[file_type]["__all__"] = {"insert_idx": idx, "node": node}

    # Aggregate all the imports statements (we look for duplicates with the code_for_node, not the nodes themselves because
    # they are wrapped in SimpleStatementLine or If which could have different newlines, blanks etc)
    all_imports = modular_mapper.imports.copy()
    all_imports_code = {modular_mapper.python_module.code_for_node(node).strip() for node in all_imports}
    for file, mapper in modular_mapper.visited_modules.items():
        new_imports = [
            node for node in mapper.imports if mapper.python_module.code_for_node(node).strip() not in all_imports_code
        ]
        new_imports_code = {mapper.python_module.code_for_node(node).strip() for node in new_imports}
        all_imports.extend(new_imports)
        all_imports_code.update(new_imports_code)

    # Find the correct imports, and write the new modules
    for file, body in files.items():
        new_body = [k[1]["node"] for k in sorted(body.items(), key=lambda x: x[1]["insert_idx"])]
        needed_imports = get_needed_imports(body, all_imports)
        full_module = needed_imports + new_body
        new_module = cst.Module(body=full_module, header=modular_mapper.python_module.header)
        files[file] = new_module

    return files


def convert_modular_file(modular_file):
    pattern = re.search(r"modular_(.*)(?=\.py$)", modular_file)
    output = {}
    if pattern is not None:
        model_name = pattern.groups()[0]
        # Parse the Python file
        with open(modular_file, "r", encoding="utf-8") as file:
            code = file.read()
        module = cst.parse_module(code)
        wrapper = MetadataWrapper(module)
        cst_transformers = ModularFileMapper(module, model_name)
        wrapper.visit(cst_transformers)
        for file, module in create_modules(cst_transformers).items():
            if module != {}:
                # Get relative path starting from src/transformers/
                relative_path = re.search(
                    r"(src/transformers/.*|examples/.*)", os.path.abspath(modular_file).replace("\\", "/")
                ).group(1)

                header = AUTO_GENERATED_MESSAGE.format(
                    relative_path=relative_path, short_name=os.path.basename(relative_path)
                )
                ruffed_code = run_ruff(header + module.code, True)
                formatted_code = run_ruff(ruffed_code, False)
                output[file] = [formatted_code, ruffed_code]
        return output
    else:
        print(f"modular pattern not found in {modular_file}, exiting")
        return {}


def save_modeling_file(modular_file, converted_file):
    for file_type in converted_file.keys():
        file_name_prefix = file_type.split("*")[0]
        file_name_suffix = file_type.split("*")[-1] if "*" in file_type else ""
        new_file_name = modular_file.replace("modular_", f"{file_name_prefix}_").replace(
            ".py", f"{file_name_suffix}.py"
        )
        non_comment_lines = len(
            [line for line in converted_file[file_type][0].strip().split("\n") if not line.strip().startswith("#")]
        )
        if len(converted_file[file_type][0].strip()) > 0 and non_comment_lines > 0:
            with open(new_file_name, "w", encoding="utf-8") as f:
                f.write(converted_file[file_type][0])
        else:
            non_comment_lines = len(
                [line for line in converted_file[file_type][0].strip().split("\n") if not line.strip().startswith("#")]
            )
            if len(converted_file[file_type][1].strip()) > 0 and non_comment_lines > 0:
                logger.warning("The modeling code contains errors, it's written without formatting")
                with open(new_file_name, "w", encoding="utf-8") as f:
                    f.write(converted_file[file_type][1])


if __name__ == "__main__":
    parser = argparse.ArgumentParser()
    parser.add_argument(
        "--files_to_parse",
        default=["all"],
        nargs="+",
        help="A list of `modular_xxxx` files that should be converted to single model file",
    )
    args = parser.parse_args()
    if args.files_to_parse == ["all"]:
        args.files_to_parse = glob.glob("src/transformers/models/**/modular_*.py", recursive=True)
    if args.files_to_parse == ["examples"]:
        args.files_to_parse = glob.glob("examples/**/modular_*.py", recursive=True)
    else:
        for i, model_name in enumerate(args.files_to_parse):
            if os.sep not in model_name:
                full_path = os.path.join("src", "transformers", "models", model_name, f"modular_{model_name}.py")
                # If it does not exist, try in the examples section
                if not os.path.isfile(full_path):
                    full_path = os.path.join("examples", "modular-transformers", f"modular_{model_name}.py")
                # We did not find it anywhere
                if not os.path.isfile(full_path):
                    raise ValueError(f"Cannot find a modular file for {model_name}. Please provide the full path.")
                args.files_to_parse[i] = full_path

    priority_list, _ = find_priority_list(args.files_to_parse)
    assert len(priority_list) == len(args.files_to_parse), "Some files will not be converted"

    for file_name in priority_list:
        print(f"Converting {file_name} to a single model single file format")
        module_path = file_name.replace("/", ".").replace(".py", "").replace("src.", "")
        converted_files = convert_modular_file(file_name)
        converter = save_modeling_file(file_name, converted_files)